ModuLand plug-in for Cytoscape: extensively overlapping modules, community centrality and their use in biological networks - Máté Szalay-Beko; Robin Palotai; Balázs Szappanos; István A. Kovács; Balázs Papp; Peter Csermely (CoRR, 2011)

ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality. - Máté Szalay-Beko; Robin Palotai; Balázs Szappanos; István A. Kovács; Balázs Papp; Peter Csermely (Bioinform., 2012)

SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks. - Dávid Fazekas; Mihály Koltai; Dénes Türei; Dezsö Módos; Máté Pálfy; Zoltán Dúl; Lilian Zsákai; Máté Szalay-Beko; Katalin Lenti; Illés J. Farkas; Tibor Vellai; Peter Csermely; et al. (BMC Syst. Biol., 2013)

The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks. - Bence Ágg; Andrea Császár; Máté Szalay-Beko; Dániel V. Veres; Réka Mizsei; Péter Ferdinandy; Péter Csermely; István A. Kovács (Bioinform., 2019)

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. - Luca Csabai; Dávid Fazekas; Tamás Kadlecsik; Máté Szalay-Beko; Balázs Bohár; Matthew Madgwick; Dezsö Módos; Marton Olbei; Lejla Gul; Padhmanand Sudhakar; János Kubisch; Oyebode J. Oyeyemi; et al. (Nucleic Acids Res., 2022)