Resolving Gendered Ambiguous Pronouns with BERT. - Matei Ionita; Yury Kashnitsky; Ken Krige; Vladimir Larin; Denis Logvinenko; Atanas Atanasov (CoRR, 2019)

Omnibus and robust deconvolution scheme for bulk RNA sequencing data integrating multiple single-cell reference sets and prior biological knowledge. - Chixiang Chen; Yuk Yee Leung; Matei Ionita; Li-San Wang; Mingyao Li (Bioinform., 2022)

MAESTRO: Masked Encoding Set Transformer with Self-Distillation. - Matthew Eric Lee; Jaesik Kim; Matei Ionita; Jonghyun Lee; Michelle L. McKeague; Yonghyun Nam; Irene Khavin; Yidi Huang; Victoria Fang; Sokratis Apostolidis; Divij Mathew; Shwetank; et al. (ICLR, 2025)