Bioinformatic Tools for Genotyping of Klebsiella pneumoniae Isolates. - Marketa Nykrynova; Denisa Maderankova; Matej Bezdicek; Martina Lengerova; Helena Skutkova (ITIB, 2018)

Clustering of Klebsiella Strains Based on Variability in Sequencing Data. - Vojtech Barton; Marketa Nykrynova; Matej Bezdicek; Martina Lengerova; Helena Skutkova (IWBBIO (2), 2019)

Entropy-Based Detection of Genetic Markers for Bacteria Genotyping. - Marketa Nykrynova; Denisa Maderankova; Vojtech Barton; Matej Bezdicek; Martina Lengerova; Helena Skutkova (IWBBIO (2), 2019)

Detection of Highly Variable Genome Fragments in Unmapped Reads of Escherichia coli Genomes. - Marketa Nykrynova; Vojtech Barton; Matej Bezdicek; Martina Lengerova; Helena Skutkova (IWBBIO, 2020)

Raw nanopore squiggle alignment for bacterial typing distinction enhancement. - Marketa Nykrynova; Vojtech Barton; Martin Vítek; Matej Bezdicek; Martina Lengerova; Helena Skutkova (BIBM, 2021)

Bacterial phenotype prediction based on methylation site profiles. - Marketa Nykrynova; Matej Bezdicek; Martina Lengerova; Helena Skutkova (CIBCB, 2023)

Exploring DNA Methylation Patterns in the Core Genome of Klebsiella pneumoniae. - Marketa Nykrynova; Matej Bezdicek; Martina Lengerova; Helena Vitkova (IWBBIO (2), 2024)

Unveiling Diversity: Classification of Klebsiella Pneumoniae Plasmids from Long-read Assemblies. - Helena Vitkova; Marketa Nykrynova; Matej Bezdicek; Martina Lengerova (IWBBIO (2), 2024)