A new retrieval system for infrared spectra. - Jure Zupan; Dusan Hadzi; Matej Penca (Comput. Chem., 1977)

Interactive Simulation of Infrared, Mass, and 13C NMR Spectra. - Marko Razinger; Jure Zupan; Matej Penca; B. Barlic (J. Chem. Inf. Comput. Sci., 1980)

Graphical handling of wide-ranging data: graphing of photon cross-section data. - Dusanka Janezic; Matej Penca; B. B. Lide; David R. Lide (J. Chem. Inf. Comput. Sci., 1990)

New all-atom force field for molecular dynamics simulation of an AlPO4-34 molecular sieve. - Matej Praprotnik; Stanko Hocevar; Milan Hodoscek; Matej Penca; Dusanka Janezic (J. Comput. Chem., 2008)

ProBiS-Database: Precalculated Binding Site Similarities and Local Pairwise Alignments of PDB Structures. - Janez Konc; Tomo Cesnik; Joanna Trykowska Konc; Matej Penca; Dusanka Janezic (J. Chem. Inf. Model., 2012)