KARDIA: A Matlab software for the analysis of cardiac interbeat intervals. - Pandelis Perakakis; Mateus Joffily; Michael Taylor 001; Pedro Guerra; Jaime Vila (Comput. Methods Programs Biomed., 2010)

Role of the parietal cortex in predicting incoming actions. - Ana Paula Fontana; James M. Kilner; Èrika C. Rodrigues; Mateus Joffily; Norbert Nighoghossian; Claudia D. Vargas; Angela Sirigu (NeuroImage, 2012)

Emotional Valence and the Free-Energy Principle. - Mateus Joffily; Giorgio Coricelli (PLoS Comput. Biol., 2013)

Active Inference for Adaptive BCI: application to the P300 Speller. - Jelena Mladenovic; Jérémy Frey; Emmanuel Maby; Mateus Joffily; Fabien Lotte; Jérémie Mattout (CoRR, 2018)