Automatic Generation of Parallel Cache-Efficient Code Implementing Zuker's RNA Folding. - Marek Palkowski; Wlodzimierz Bielecki; Mateusz Gruzewski (ICAISC (1), 2020)

Implementation of Nussinov's RNA Folding Using the Kokkos Library. - Mateusz Gruzewski; Marek Palkowski (CORES/IP&C/ACS, 2021)

RNA Folding Codes Optimization Using the Intel SDK for OpenCL. - Mateusz Gruzewski; Marek Palkowski (ICAISC (2), 2021)

Automatic Generation of OpenCL Code through Polyhedral Compilation with LLM. - Marek Palkowski; Mateusz Gruzewski (FedCSIS, 2024)

Cross-platform and polyhedral programming for Nussinov RNA folding. - Mateusz Gruzewski; Marek Palkowski (Future Gener. Comput. Syst., 2025)