Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots. - Mateusz Sikora; Joanna I. Sulkowska; Marek Cieplak (PLoS Comput. Biol., 2009)

BSDB: the biomolecule stretching database. - Mateusz Sikora; Joanna I. Sulkowska; Bartlomiej S. Witkowski; Marek Cieplak (Nucleic Acids Res., 2011)

An Exploration of the Universe of Polyglutamine Structures. - Àngel Gómez-Sicilia; Mateusz Sikora; Marek Cieplak; Mariano Carrión-Vázquez (PLoS Comput. Biol., 2015)

Computational epitope map of SARS-CoV-2 spike protein. - Mateusz Sikora; Sören von Bülow; Florian E. C. Blanc; Michael Gecht; Roberto Covino; Gerhard Hummer (PLoS Comput. Biol., 2021)

"Put your feet in open pit" - a WebXR Unity application for learning about the technological processes in the open pit mine. - Radoslaw Pomykala; Artur Cybulski; Tadeusz Klatka; Michal Patyk; Julia Bonieckal; Maciej Kedzierski; Mateusz Sikora; Jakub Juszczak; Magdalena Igras-Cybulska (VR Workshops, 2022)

Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants. - Sören von Bülow; Mateusz Sikora; Florian E. C. Blanc; Roberto Covino; Gerhard Hummer (PLoS Comput. Biol., 2023)