Application of Aligned-UMAP to longitudinal biomedical studies. - Anant Dadu; Vipul Satone; Rachneet Kaur; Mathew J. Koretsky; Hirotaka Iwaki; Yue A. Qi; Daniel M. Ramos; Brian B. Avants; Jacob Hesterman; Roger Gunn; Mark R. Cookson; Michael E. Ward; et al. (Patterns, 2023)

Lost in the Haystack: Smaller Needles are More Difficult for LLMs to Find. - Owen Bianchi; Mathew J. Koretsky; Maya Willey; Chelsea X. Alvarado; Tanay Nayak; Adi Asija; Nicole Kuznetsov; Mike A. Nalls; Faraz Faghri; Daniel Khashabi (CoRR, 2025)

BiomedSQL: Text-to-SQL for Scientific Reasoning on Biomedical Knowledge Bases. - Mathew J. Koretsky; Maya Willey; Adi Asija; Owen Bianchi; Chelsea X. Alvarado; Tanay Nayak; Nicole Kuznetsov; Sungwon Kim; Mike A. Nalls; Daniel Khashabi; Faraz Faghri (CoRR, 2025)