The Derives_From Relation in Biomedical Ontologies. - Mathias Brochhausen (MIE, 2006)

Preface to ONISW 2007. - Mathias Brochhausen; Martin Doerr; Hyoil Han (ER Workshops, 2007)

Ontology Based Integration of Distributed and Heterogeneous Data Sources in ACGT. - Luis Martín; Alberto Anguita; Victor Maojo; Erwin Bonsma; Anca I. D. Bucur; Jeroen Vrijnsen; Mathias Brochhausen; Cristian Cocos; Holger Stenzhorn; Manolis Tsiknakis; Martin Doerr; Haridimos Kondylakis (HEALTHINF (1), 2008)

The ACGT Master Ontology on Cancer - A New Terminology Source for Oncological Practice. - Mathias Brochhausen; Gabriele Weiler; Cristian Cocos; Holger Stenzhorn; Norbert M. Graf; Martin Doerr; Manolis Tsiknakis (CBMS, 2008)

Applications of the ACGT Master Ontology on Cancer. - Mathias Brochhausen; Gabriele Weiler; Luis Martín; Cristian Cocos; Holger Stenzhorn; Norbert M. Graf; Martin Doerr; Manolis Tsiknakis; Barry Smith 001 (OTM Workshops, 2008)

A Semantic Grid Infrastructure Enabling Integrated Access and Analysis of Multilevel Biomedical Data in Support of Postgenomic Clinical Trials on Cancer. - Manolis Tsiknakis; Mathias Brochhausen; Jarek Nabrzyski; Juliusz Pukacki; Stelios Sfakianakis; George Potamias; Christine Desmedt; Dimitris Kafetzopoulos (IEEE Trans. Inf. Technol. Biomed., 2008)

Preface for the Special Issue on Ontologies and Information Systems for the Semantic Web. - Hyoil Han; Ramez Elmasri; Martin Doerr; Mathias Brochhausen (J. Comput. Sci. Eng., 2009)

Evaluating Ontologies with NLP-Based Terminologies - A Case Study on ACGT and Its Master Ontology. - Gintare Grigonyte; Mathias Brochhausen; Luis Martín; Manolis Tsiknakis; Johann Haller (FOIS, 2010)

The ObTiMA System - Ontology-based Managing of Clinical Trials. - Holger Stenzhorn; Gabriele Weiler; Mathias Brochhausen; Fatima Schera; Vangelis Kritsotakis; Manolis Tsiknakis; Stephan Kiefer; Norbert M. Graf (MedInfo, 2010)

On Some Best Practices in Large-Scale Ontology Development: The Chronious Ontology Suite as a Case Study. - Luc Schneider; Mathias Brochhausen; David Koepsell (FOMI, 2011)

The CHRONIOUS Ontology Suite: Methodology and Design Principles. - Luc Schneider; Mathias Brochhausen (ICBO, 2011)

Higgs Bosons, Mars Missions, and Unicorn Delusions: How to Deal with Terms of Dubious Reference in Scientific Ontologies. - Stefan Schulz 001; Mathias Brochhausen; Robert Hoehndorf (ICBO, 2011)

Architectural Approach for Providing Relations in Biomedical Terminologies and Ontologies. - Mathias Brochhausen; Bernd Blobel (MIE, 2011)

ACGT: Advancing Clinico-genomic trials on cancer - Four years of experience. - Luis Martín; Alberto Anguita; Norbert M. Graf; Manolis Tsiknakis; Mathias Brochhausen; Stefan Rüping 001; Anca I. D. Bucur; Stelios Sfakianakis; Thierry Sengstag; Francesca Buffa; Holger Stenzhorn (MIE, 2011)

The ACGT Master Ontology and its applications - Towards an ontology-driven cancer research and management system. - Mathias Brochhausen; Andrew D. Spear; Cristian Cocos; Gabriele Weiler; Luis Martín; Alberto Anguita; Holger Stenzhorn; Evangelia Daskalaki; Fatima Schera; Ulf Schwarz; Stelios Sfakianakis; Stephan Kiefer; et al. (J. Biomed. Informatics, 2011)

Towards an Ontology of Document Acts: Introducing a Document Act Template for Healthcare. - Mauricio Barcellos Almeida; Laura Slaughter; Mathias Brochhausen (OTM Workshops, 2012)

Simplifying MIREOT; a MIREOT Protege Plugin. - Josh Hanna; Chen Cheng; Alex Crow; Roger A. Hall; Jie Liu; Tejaswini Pendurthi; Trent Schmidt; Steven F. Jennings; Mathias Brochhausen; William R. Hogan (ISWC (Posters & Demos), 2012)

A Demonstration of Entity Identity Information Management Applied to Demographic Data in a Referent Tracking System. - Cheng Chen 001; Josh Hanna; John R. Talburt; Mathias Brochhausen; William R. Hogan (ICBO, 2013)

Towards a Consistent and Scientifically Accurate Drug Ontology. - William R. Hogan; Josh Hanna; Eric Joseph; Mathias Brochhausen (ICBO, 2013)

The Core Clinical Protocol Ontology (C2PO): A Realist Ontology for Representing the Recommendations within Clinical Guidelines. - Laura Slaughter; Mathias Brochhausen; William R. Hogan; Øystein Nytrø (MedInfo, 2013)

An Ontology for Clinical Trial Data Integration. - Ratnesh Sahay; Dimitrios Ntalaperas; Eleni Kamateri; Panagiotis Hasapis; Oya Deniz Beyan; Marie-Pierre F. Strippoli; Christiana Demetriou; Thomai Gklarou-Stavropoulou; Mathias Brochhausen; Konstantinos A. Tarabanis; Thanassis Bouras; David Tian; et al. (SMC, 2013)

Developing a semantically rich ontology for the biobank-administration domain. - Mathias Brochhausen; Martin N. Fransson; Nitin Kanaskar; Mikael Eriksson; Roxana Merino-Martinez; Roger A. Hall; Loreana Norlin; Sanela Kjellqvist; Maria Hortlund; Umit Topaloglu; William R. Hogan; Jan-Eric Litton (J. Biomed. Semant., 2013)

Building a drug ontology based on RxNorm and other sources. - Josh Hanna; Eric Joseph; Mathias Brochhausen; William R. Hogan (J. Biomed. Semant., 2013)

An Ontological Analysis of Reference in Health Record Statements. - Stefan Schulz 001; Catalina Martínez-Costa; Daniel Karlsson; Ronald Cornet; Mathias Brochhausen; Alan L. Rector (FOIS, 2014)

A Novel Representation of Terms Related to Infectious Disease Epidemiology for Epidemic Modeling: The Apollo Structured Vocabulary and Pre-existing Representations. - Mathias Brochhausen; William R. Hogan; John D. Levander; Shawn T. Brown; Nicholas Millett; Josh Hanna; Michael M. Wagner 001 (ICBO, 2014)

Clinical modeling - A critical analysis. - Bernd Blobel; William Goossen; Mathias Brochhausen (Int. J. Medical Informatics, 2014)

Formalizing Knowledge and Evidence about Potential Drug-drug Interactions. - Jodi Schneider; Mathias Brochhausen; Samuel Rosko; Paolo Ciccarese; William R. Hogan; Daniel C. Malone; Yifan Ning; Tim Clark; Richard D. Boyce (BDM2I@ISWC, 2015)

Measuring the Usability of Triple Stores for Knowledge Management on Trauma Care Organizations. - Joseph Utecht; Mathias Brochhausen (SWAT4LS, 2015)

Toward a complete dataset of drug-drug interaction information from publicly available sources. - Serkan Ayvaz; John R. Horn; Oktie Hassanzadeh; Qian Zhu 003; Johann Stan; Nicholas P. Tatonetti; Santiago Vilar; Mathias Brochhausen; Matthias Samwald; Majid Rastegar-Mojarad; Michel Dumontier; Richard D. Boyce (J. Biomed. Informatics, 2015)

Adding Evidence Type Representation to DIDEO. - Mathias Brochhausen; Philip E. Empey; Jodi Schneider; William R. Hogan; Richard D. Boyce (ICBO/BioCreative, 2016)

Easy Extraction of Terms and Definitions with OWL2TL. - John Judkins; Joseph Utecht; Mathias Brochhausen (ICBO/BioCreative, 2016)

OOSTT: a Resource for Analyzing the Organizational Structures of Trauma Centers and Trauma Systems. - Joseph Utecht; John Judkins; Mathias Brochhausen; Terra Colvin Jr.; J. Neil Otte; Nicholas Rogers; Robert Rose; Maria Alvi; Amanda Hicks; Jane Ball; Stephen M. Bowman; Robert T. Maxson; et al. (ICBO/BioCreative, 2016)

OBIB-a novel ontology for biobanking. - Mathias Brochhausen; Jie Zheng 001; David L. Birtwell; Heather Williams; Anna Maria Masci; Helena Judge Ellis; Christian J. Stoeckert Jr. (J. Biomed. Semant., 2016)

The ontology of medically related social entities: recent developments. - Amanda Hicks; Josh Hanna; Daniel Welch 003; Mathias Brochhausen; William R. Hogan (J. Biomed. Semant., 2016)

The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation. - William R. Hogan; Michael M. Wagner 001; Mathias Brochhausen; John D. Levander; Shawn T. Brown; Nicholas Millett; Jay DePasse; Josh Hanna (J. Biomed. Semant., 2016)

Toward a reliable and interoperable public repository for natural product drug interaction study data. - Richard D. Boyce; Isabelle Ragueneau-Majlessi; Jingjing Yu; Jessica Sontheimer; Chris Kinsella; Mathias Brochhausen; John Judkins; Bruce Pinkleton; Rebecca L. Cooney; Mary Paine; Jeannine McCune (AMIA, 2017)

Creating RDF Data on Trauma Care Organizations from Questionnaires. - Joseph R. Utecht; Jonathan P. Bona; Mathias Brochhausen (AMIA, 2017)

Toward Using Ontologies to Improve Results in Searches for Mental Health Information. - Jonathan P. Bona; John Grohol; Meredith N. Zozus; Robert Zozus; Mathias Brochhausen (ICBO, 2017)

Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation. - Joseph Utecht; Mathias Brochhausen; John Judkins; Jodi Schneider; Richard D. Boyce (MedInfo, 2017)

Ontologies Enabling Non-image Data Queries in The Cancer Imaging Archive. - Jonathan P. Bona; Tracy S. Nolan; Dillon Gibson; Mathias Brochhausen (AMIA, 2018)

Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers. - Richard D. Boyce; Isabelle Ragueneau-Majlessi; Jingjing Yu; Jessica Sontheimer; Chris Kinsella; Eric Chou; Mathias Brochhausen; John Judkins; Brandon T. Gufford; Bruce Pinkleton; Rebecca L. Cooney; Mary Paine; et al. (AMIA, 2018)

Ontology-Enhanced Representations of Non-Image Data in The Cancer Image Archive. - Jonathan P. Bona; Tracy S. Nolan; Mathias Brochhausen (ICBO, 2018)

Towards the Development of an Opioid Misuse Ontology. - Corey J. Hayes; Jonathan P. Bona; Mathias Brochhausen (ICBO, 2018)

Coordinated Evolution of Ontologies of Informed Consent. - J. Neil Otte; Cooper Stansbury; Jonathan Vajda; Frank J. Manion; Elizabeth Umberfield; Yongqun He; Marcelline R. Harris; Jihad S. Obeid; Mathias Brochhausen; William D. Duncan; Cui Tao (ICBO, 2018)

Modeling the Personal Health Ecosystem. - Bernd Blobel; Mathias Brochhausen; Pekka Ruotsalainen (pHealth, 2018)

The Role of Axiomatically-Rich Ontologies in Transforming Medical Data to Knowledge. - Mathias Brochhausen; Jonathan P. Bona; Bernd Blobel (pHealth, 2018)

Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse. - John Judkins; Jessica Tay-Sontheimer; Richard D. Boyce; Mathias Brochhausen (J. Biomed. Semant., 2018)

A Proposal for Determining the Evidence Types of Biomedical Documents Using a Drug-drug Interaction Ontology and Machine Learning. - Linh Hoang; Richard D. Boyce; Mathias Brochhausen; Joseph Utecht; Jodi Schneider (AAAI Spring Symposium: Combining Machine Learning with Knowledge Engineering, 2019)

Providing a User-oriented Interface to Enable Semantic Queries in PRISM. - Jonathan P. Bona; Joseph Utecht; Mathias Brochhausen (AMIA, 2019)

Using Semantic Representations for Urine Drug Tests in the Veterans Health Administration. - Corey J. Hayes; Jonathan P. Bona; Mathias Brochhausen (AMIA, 2019)

Semantic Representations of Multi-Modal Data, NeuroInformatic Processing Pipelines, and Derived Neuroimaging Results in the Arkansas Image Enterprise System (ARIES). - Aaron S. Kemp; Jonathan P. Bona; Tracy S. Nolan; Linda J. Larson-Prior; Tuhin Virmani; Lakshmi R. Pillai; Mathias Brochhausen; Lawrence Tarbox; Fred W. Prior (AMIA, 2019)

Semantic Integration of Neuroinformatics Data in the Arkansas Image Enterprise System with Open Biomedical Ontologies. - Jonathan P. Bona; Aaron S. Kemp; Tracy S. Nolan; Linda J. Larson-Prior; Aparna Das; Tuhin Virmani; Lakshmi R. Pillai; Mathias Brochhausen; Fred W. Prior (ICBO, 2019)

Building a Shared Ontology Use Patterns Repository. - Jonathan P. Bona; Joseph Utecht; Sarah Bost; Corey J. Hayes; Mathias Brochhausen (ICBO, 2019)

Mapping Data Annotated with the Minimum Information About BIobank data Sharing (MIABIS) 2.0 to the Ontology for Biobanking (OBIB). - Sarah Bost; Niina Eklund; Kaisa Silander; Jie Zheng 001; Christian J. Stoeckert Jr.; Mathias Brochhausen (ICBO, 2019)

Development and Validation of a Controlled Vocabulary: An OWL Representation of Organizational Structures of Trauma Centers and Trauma Systems. - Joseph Utecht; Jane Ball; Stephen M. Bowman; Jimm Dodd; John Judkins; Robert T. Maxson; Rosemary Nabaweesi; Rohit Pradhan; Nels D. Sanddal; Robert J. Winchell; Mathias Brochhausen (MedInfo, 2019)

Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers. - Jonathan P. Bona; Mathias Brochhausen; William R. Hogan (BMC Bioinform., 2019)

Automatically classifying the evidence type of drug-drug interaction research papers as a step toward computer supported evidence curation. - Linh K. Hoang; Richard D. Boyce; Nigel Bosch; Britney Stottlemyer; Mathias Brochhausen; Jodi Schneider (AMIA, 2020)

Autonomous Systems and Artificial Intelligence in Healthcare Transformation to 5P Medicine - Ethical Challenges. - Bernd Blobel; Pekka Ruotsalainen; Mathias Brochhausen; Frank Oemig; Gustavo A. Uribe (MIE, 2020)

Autonomous Systems and Artificial Intelligence - Hype or Prerequisite for P5 Medicine? - Bernd Blobel; Pekka Ruotsalainen; Mathias Brochhausen (pHealth, 2021)

Understanding the Gap Between Information Models and Realism-Based Ontologies Using the Generic Component Model. - Mathias Brochhausen; Sarah J. Bost; Nitya Singh; Christoph Brochhausen; Bernd Blobel (pHealth, 2021)

Standardization of assay representation in the Ontology for Biomedical Investigations. - Randi Vita; Jie Zheng 001; Rebecca C. Jackson; Damion M. Dooley; James A. Overton; Mark A. Miller; Daniel C. Berrios; Richard H. Scheuermann; Yongqun He; Hande Küçük-McGinty; Mathias Brochhausen; Aisyah Yu Lin; et al. (Database J. Biol. Databases Curation, 2021)

Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO). - Nitya Singh; Naomi Braun; William R. Hogan; Mathias Brochhausen (ICIMTH, 2022)

Ontology-based Integration of Consumer Data and EHR Systems to Fill Gaps in Social Determinants of Health Data. - S. Clint Dowland; Melody L. Greer; Sudeepa Bhattacharyya; Mathias Brochhausen (ICBO, 2023)

Guidelines for the reuse of ontology content. - Michael Halper; Larisa N. Soldatova; Mathias Brochhausen; Fatima Sabiu Maikore; Christopher Ochs; Yehoshua Perl (Appl. Ontology, 2023)

Development and validation of the early warning system scores ontology. - Cilia E. Zayas; Justin M. Whorton; Kevin W. Sexton; Charles D. Mabry; S. Clint Dowland; Mathias Brochhausen (J. Biomed. Semant., 2023)

Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems. - Diya Mehta; Justin M. Whorton; Reza Shahriari; Eric D. Ragan; Jonathan P. Bona; William R. Hogan; Kevin W. Sexton; Mathias Brochhausen (ICBO, 2024)

The Representational Challenge for Designing and Managing 5P Medicine Ecosystems. - Bernd Blobel; Frank Oemig; Pekka Ruotsalainen; Mathias Brochhausen; Mauro Giacomini (pHealth, 2024)