A Pattern Recognition Approach to Automated Coronary Calcium Scoring. - Ivana Isgum; Bram van Ginneken; Mathias Prokop (ICPR (3), 2004)

Local noise reduction for emphysema scoring in low-dose CT images. - Arnold M. R. Schilham; Mathias Prokop; Hester A. Gietema; Bram van Ginneken (Image Processing, 2005)

Toward Automated Segmentation of the Pathological Lung in CT. - Ingrid Sluimer; Mathias Prokop; Bram van Ginneken (IEEE Trans. Medical Imaging, 2005)

Improved classification of pulmonary nodules by automated detection of benign subpleural lymph nodes. - M. A. J. Klik; Eva M. van Rikxoort; Joost F. Peters; H. A. Gietema; Mathias Prokop; Bram van Ginneken (ISBI, 2006)

Local noise weighted filtering for emphysema scoring of low-dose CT images. - Arnold M. R. Schilham; Bram van Ginneken; H. A. Gietema; Mathias Prokop (IEEE Trans. Medical Imaging, 2006)

Computer analysis of computed tomography scans of the lung: a survey. - Ingrid Sluimer; Arnold M. R. Schilham; Mathias Prokop; Bram van Ginneken (IEEE Trans. Medical Imaging, 2006)

Automated detection of pulmonary nodules from low-dose computed tomography scans using a two-stage classification system based on local image features. - Keelin Murphy; Arnold M. R. Schilham; Hester A. Gietema; Mathias Prokop; Bram van Ginneken (Computer-Aided Diagnosis, 2007)

Automated detection of nodules attached to the pleural and mediastinal surface in low-dose CT scans. - Bram van Ginneken; Andre Tan; Keelin Murphy; Bart-Jan de Hoop; Mathias Prokop (Computer-Aided Diagnosis, 2008)

Supervised Enhancement Filters: Application to Fissure Detection in Chest CT Scans. - Eva M. van Rikxoort; Bram van Ginneken; M. A. J. Klik; Mathias Prokop (IEEE Trans. Medical Imaging, 2008)

Fast Noise Reduction in Computed Tomography for Improved 3-D Visualization. - Michiel Schaap; Arnold M. R. Schilham; Karel J. Zuiderveld; Mathias Prokop; Evert-Jan Vonken; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2008)

Automatic Segmentation of the Pulmonary Lobes from Fissures, Airways, and Lung Borders: Evaluation of Robustness against Missing Data. - Eva M. van Rikxoort; Mathias Prokop; Bartjan de Hoop; Max A. Viergever; Josien P. W. Pluim; Bram van Ginneken (MICCAI (1), 2009)

Segmentation of arteries and veins on 4D CT perfusion scans for constructing arteriograms and venograms. - Adriënne Mendrik; Evert-Jan Vonken; Annet Waaijer; Ewoud J. Smit; Mathias Prokop; Bram van Ginneken (Image Processing, 2009)

A large-scale evaluation of automatic pulmonary nodule detection in chest CT using local image features and k-nearest-neighbour classification. - Keelin Murphy; Bram van Ginneken; Arnold M. R. Schilham; Bartjan de Hoop; H. A. Gietema; Mathias Prokop (Medical Image Anal., 2009)

Multi-Atlas-Based Segmentation With Local Decision Fusion - Application to Cardiac and Aortic Segmentation in CT Scans. - Ivana Isgum; Marius Staring; Annemarieke Rutten; Mathias Prokop; Max A. Viergever; Bram van Ginneken (IEEE Trans. Medical Imaging, 2009)

Automatic Segmentation of Pulmonary Segments From Volumetric Chest CT Scans. - Eva M. van Rikxoort; Bartjan de Hoop; Saskia van de Vorst; Mathias Prokop; Bram van Ginneken (IEEE Trans. Medical Imaging, 2009)

Cardiac left atrium CT image segmentation for ablation guidance. - Marc M. J. Koppert; Peter M. J. Rongen; Mathias Prokop; Bart M. ter Haar Romeny; Hans C. van Assen (ISBI, 2010)

Automatic coronary calcium scoring in low-dose non-ECG-synchronized thoracic CT scans. - Ivana Isgum; Mathias Prokop; Peter C. Jacobs; Martijn J. Gondrie; Willem P. Th. M. Mali; Max A. Viergever; Bram van Ginneken (Computer-Aided Diagnosis, 2010)

Interactive annotation of textures in thoracic CT scans. - Thessa T. J. P. Kockelkorn; Pim A. de Jong; Hester A. Gietema; Jan C. Grutters; Mathias Prokop; Bram van Ginneken (Computer-Aided Diagnosis, 2010)

Noise filtering in thin-slice 4D cerebral CT perfusion scans. - Adriënne Mendrik; Evert-Jan Vonken; Jan-Willem Dankbaar; Mathias Prokop; Bram van Ginneken (Image Processing, 2010)

Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: The ANODE09 study. - Bram van Ginneken; Samuel G. Armato III; Bartjan de Hoop; Saskia van Amelsvoort-van de Vorst; Thomas Duindam; Meindert Niemeijer; Keelin Murphy; Arnold M. R. Schilham; Alessandra Retico; Maria Evelina Fantacci; Niccolò Camarlinghi; Francesco Bagagli; et al. (Medical Image Anal., 2010)

Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures. - Eva M. van Rikxoort; Mathias Prokop; Bartjan de Hoop; Max A. Viergever; Josien P. W. Pluim; Bram van Ginneken (IEEE Trans. Medical Imaging, 2010)

On Combining Computer-Aided Detection Systems. - Meindert Niemeijer; Marco Loog; Michael D. Abràmoff; Max A. Viergever; Mathias Prokop; Bram van Ginneken (IEEE Trans. Medical Imaging, 2011)

Brain tissue segmentation in 4D CT using voxel classification. - Rieneke van den Boom; Marcel T. H. Oei; Sven Lafebre; Luuk J. Oostveen; F. J. Anton Meijer; Stefan C. A. Steens; Mathias Prokop; Bram van Ginneken; Rashindra Manniesing (Image Processing, 2012)

Automatic Coronary Calcium Scoring in Low-Dose Chest Computed Tomography. - Ivana Isgum; Mathias Prokop; Meindert Niemeijer; Max A. Viergever; Bram van Ginneken (IEEE Trans. Medical Imaging, 2012)

Extraction of Airways From CT (EXACT'09). - Pechin Lo; Bram van Ginneken; Joseph M. Reinhardt; Tarunashree Yavarna; Pim A. de Jong; Benjamin Irving; Catalin I. Fetita; Margarete Ortner; Romulo Pinho; Jan Sijbers; Marco Feuerstein; Anna Fabijanska; et al. (IEEE Trans. Medical Imaging, 2012)

Automated artery and vein detection in 4D-CT data with an unsupervised classification algorithm of the time intensity curves. - Hendrik O. A. Laue; Marcel T. H. Oei; L. Chen; Ina Nora Kompan; Horst K. Hahn; Mathias Prokop; Rashindra Manniesing (Image Processing, 2013)

A pattern recognition framework for vessel segmentation in 4D CT of the brain. - Jan-Jurre Mordang; Marcel T. H. Oei; Rieneke van den Boom; Ewoud J. Smit; Mathias Prokop; Bram van Ginneken; Rashindra Manniesing (Image Processing, 2013)

Automated detection and quantification of micronodules in thoracic CT scans to identify subjects at risk for silicosis. - Colin Jacobs; S. H. T. T. Opdam; Eva M. van Rikxoort; O. M. Mets; J. Rooyackers; Pim A. de Jong; Mathias Prokop; Bram van Ginneken (Computer-Aided Diagnosis, 2014)

Using the Fourth Dimension to Distinguish Between Structures for Anisotropic Diffusion Filtering in 4D CT Perfusion Scans. - Adriënne M. Mendrik; Evert-Jan Vonken; Theo Witkamp; Mathias Prokop; Bram van Ginneken; Max A. Viergever (STIA, 2014)

Computed tomography lung iodine contrast mapping by image registration and subtraction. - Keith A. Goatman; Costas Plakas; Joanne D. Schuijf; Erin Beveridge; Mathias Prokop (Image Processing, 2014)

Automatic detection of subsolid pulmonary nodules in thoracic computed tomography images. - Colin Jacobs; Eva M. van Rikxoort; Thorsten Twellmann; Ernst Th. Scholten; Pim A. de Jong; Jan-Martin Kuhnigk; Matthijs Oudkerk; Harry J. de Koning; Mathias Prokop; Cornelia Schaefer-Prokop; Bram van Ginneken (Medical Image Anal., 2014)

Automatic detection of spiculation of pulmonary nodules in computed tomography images. - Francesco Ciompi; Colin Jacobs; Ernst Th. Scholten; Sarah J. van Riel; Mathilde M. W. Wille; Mathias Prokop; Bram van Ginneken (Computer-Aided Diagnosis, 2015)

Automatic classification of pulmonary peri-fissural nodules in computed tomography using an ensemble of 2D views and a convolutional neural network out-of-the-box. - Francesco Ciompi; Bartjan de Hoop; Sarah J. van Riel; Kaman Chung; Ernst Th. Scholten; Matthijs Oudkerk; Pim A. de Jong; Mathias Prokop; Bram van Ginneken (Medical Image Anal., 2015)

Bag-of-Frequencies: A Descriptor of Pulmonary Nodules in Computed Tomography Images. - Francesco Ciompi; Colin Jacobs; Ernst Th. Scholten; Mathilde M. W. Wille; Pim A. de Jong; Mathias Prokop; Bram van Ginneken (IEEE Trans. Medical Imaging, 2015)

Lung iodine mapping by subtraction with image registration allowing for tissue sliding. - Brian Mohr; Monique Brink; Luuk J. Oostveen; Joanne D. Schuijf; Mathias Prokop (Image Processing, 2016)

Towards automatic pulmonary nodule management in lung cancer screening with deep learning. - Francesco Ciompi; Kaman Chung; Sarah J. van Riel; Arnaud Arindra Adiyoso Setio; Paul K. Gerke; Colin Jacobs; Ernst Th. Scholten; Cornelia Schaefer-Prokop; Mathilde M. W. Wille; Alfonso Marchiano; Ugo Pastorino; Mathias Prokop; et al. (CoRR, 2016)

Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: the LUNA16 challenge. - Arnaud Arindra Adiyoso Setio; Alberto Traverso; Thomas de Bel; Moira S. N. Berens; Cas van den Bogaard; Piergiorgio Cerello; Hao Chen 011; Qi Dou 001; Maria Evelina Fantacci; Bram Geurts; Robbert van der Gugten; Pheng-Ann Heng; et al. (CoRR, 2016)

Automatic cerebrospinal fluid segmentation in non-contrast CT images using a 3D convolutional network. - Ajay Patel; Sil C. van de Leemput; Mathias Prokop; Bram van Ginneken; Rashindra Manniesing (Computer-Aided Diagnosis, 2017)

Robust cranial cavity segmentation in CT and CT perfusion images of trauma and suspected stroke patients. - Ajay Patel; Bram van Ginneken; Frederick J. A. Meijer; Ewoud J. van Dijk; Mathias Prokop; Rashindra Manniesing (Medical Image Anal., 2017)

Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: The LUNA16 challenge. - Arnaud Arindra Adiyoso Setio; Alberto Traverso; Thomas de Bel; Moira S. N. Berens; Cas van den Bogaard; Piergiorgio Cerello; Hao Chen 011; Qi Dou 001; Maria Evelina Fantacci; Bram Geurts; Robbert van der Gugten; Pheng-Ann Heng; et al. (Medical Image Anal., 2017)

Quantitative CT based radiomics as predictor of resectability of pancreatic adenocarcinoma. - Joost van der Putten; Svitlana Zinger; Fons van der Sommen; Peter H. N. de With; Mathias Prokop; John Hermans (Computer-Aided Diagnosis, 2018)

Image Level Training and Prediction: Intracranial Hemorrhage Identification in 3D Non-Contrast CT. - Ajay Patel; Sil C. van de Leemput; Mathias Prokop; Bram van Ginneken; Rashindra Manniesing (IEEE Access, 2019)

Image-level detection of arterial occlusions in 4D-CTA of acute stroke patients using deep learning. - Midas Meijs; Frederick J. A. Meijer; Mathias Prokop; Bram van Ginneken; Rashindra Manniesing (Medical Image Anal., 2020)

Stacked Bidirectional Convolutional LSTMs for Deriving 3D Non-Contrast CT From Spatiotemporal 4D CT. - Sil C. van de Leemput; Mathias Prokop; Bram van Ginneken; Rashindra Manniesing (IEEE Trans. Medical Imaging, 2020)

Automated Estimation of Total Lung Volume using Chest Radiographs and Deep Learning. - Ecem Sogancioglu; Keelin Murphy; Ernst Th. Scholten; Luuk H. Boulogne; Mathias Prokop; Bram van Ginneken (CoRR, 2021)

Kidney abnormality segmentation in thorax-abdomen CT scans. - Gabriel Efrain Humpire Mamani; Nikolas Lessmann; Ernst Th. Scholten; Mathias Prokop; Colin Jacobs; Bram van Ginneken (CoRR, 2023)

Transfer learning from a sparsely annotated dataset of 3D medical images. - Gabriel Efrain Humpire Mamani; Colin Jacobs; Mathias Prokop; Bram van Ginneken; Nikolas Lessmann (CoRR, 2023)

Dataset for: Kidney abnormality segmentation in thorax-abdomen CT scans. - Gabriel Efrain Humpire Mamani; Luc Builtjes; Colin Jacobs; Bram van Ginneken; Mathias Prokop; Ernst Th. Scholten (Zenodo, 2023)

MRSegmentator: Robust Multi-Modality Segmentation of 40 Classes in MRI and CT Sequences. - Hartmut Häntze; Lina Xu; Felix J. Dorfner; Leonhard Donle; Daniel Truhn; Hugo J. W. L. Aerts; Mathias Prokop; Bram van Ginneken; Alessa Hering; Lisa C. Adams; Keno K. Bressem (CoRR, 2024)

Explainable machine learning model based on clinical factors for predicting the disappearance of indeterminate pulmonary nodules. - Jingxuan Wang; Nikos Sourlos; Marjolein Heuvelmans; Mathias Prokop; Rozemarijn Vliegenthart; Peter M. A. van Ooijen (Comput. Biol. Medicine, 2024)

Towards safe and reliable deep learning for lung nodule malignancy estimation using out-of-distribution detection. - Dre Peeters; Kiran Vaidhya Venkadesh; Renate Dinnessen; Zaigham Saghir; Ernst Th. Scholten; Rozemarijn Vliegenthart; Mathias Prokop; Colin Jacobs (Comput. Biol. Medicine, 2025)

The ULS23 challenge: A baseline model and benchmark dataset for 3D universal lesion segmentation in computed tomography. - M. J. J. de Grauw; Ernst Th. Scholten; Ewoud J. Smit; M. J. C. M. Rutten; Mathias Prokop; Bram van Ginneken; Alessa Hering (Medical Image Anal., 2025)

Divide to Conquer: A Field Decomposition Approach for Multi-Organ Whole-Body CT Image Registration. - Xuan Loc Pham; Mathias Prokop; Bram van Ginneken; Alessa Hering (CoRR, 2025)

Robust Kidney Abnormality Segmentation: A Validation Study of an AI-Based Framework. - Sarah de Boer; Hartmut Häntze; Kiran Vaidhya Venkadesh; Myrthe A. D. Buser; Gabriel Efrain Humpire Mamani; Lina Xu; Lisa C. Adams; Jawed Nawabi; Keno K. Bressem; Bram van Ginneken; Mathias Prokop; Alessa Hering (CoRR, 2025)

Unstable Prompts, Unreliable Segmentations: A Challenge for Longitudinal Lesion Analysis. - Niels Rocholl; Ewoud J. Smit; Mathias Prokop; Alessa Hering (CoRR, 2025)

Leveraging Open-Source Large Language Models for Clinical Information Extraction in Resource-Constrained Settings. - Luc Builtjes; Joeran S. Bosma; Mathias Prokop; Bram van Ginneken; Alessa Hering (CoRR, 2025)