A comparison of common programming languages used in bioinformatics. - Mathieu Fourment; Michael R. Gillings (BMC Bioinform., 2008)

The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences. - Mathieu Fourment; Mark J. Gibbs (BMC Bioinform., 2008)

Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies. - Chris Whidden; Brian C. Claywell; Thayer Fisher; Andrew F. Magee; Mathieu Fourment; Frederick A. Matsen IV (CoRR, 2018)

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. - Remco R. Bouckaert; Timothy G. Vaughan; Joëlle Barido-Sottani; Sebastián Duchêne; Mathieu Fourment; Alexandra Gavryushkina; Joseph Heled; Graham Jones; Denise Kühnert; Nicola De Maio; Michael Matschiner; Fábio K. Mendes; et al. (PLoS Comput. Biol., 2019)

Fidelity of hyperbolic space for Bayesian phylogenetic inference. - Matthew Macaulay; Aaron E. Darling; Mathieu Fourment (PLoS Comput. Biol., 2023)

A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm. - Seong-Hwan Jun; Hassan Nasif; Chris Jennings-Shaffer; David H. Rich; Anna Kooperberg; Mathieu Fourment; Cheng Zhang; Marc A. Suchard; Frederick A. Matsen IV (Algorithms Mol. Biol., 2023)

Many-core algorithms for high-dimensional gradients on phylogenetic trees. - Karthik Gangavarapu; Xiang Ji; Guy Baele; Mathieu Fourment; Philippe Lemey; Frederick A. Matsen IV; Marc A. Suchard (Bioinform., 2024)