Linear Encoding Scheme for Weighted Finite Automata. - Mathieu Giraud; Dominique Lavenier (CIAA, 2004)

Dealing with Hardware Space Limits when Removing Epsilon-Transitions in a Genomic Weighted Finite Automaton. - Mathieu Giraud; Dominique Lavenier (J. Autom. Lang. Comb., 2005)

Cluster of re-configurable nodes for scanning large genomic banks. - Stéphane Guyetant; Mathieu Giraud; Ludovic L'Hours; Steven Derrien; Stéphane Rubini; Dominique Lavenier; Frédéric Raimbault (Parallel Comput., 2005)

Encodage linéaire d'automates pondérés. Filtrage de motifs génomiques et application sur l'architecture prototype R-disk. - Mathieu Giraud; Stéphane Guyetant; Dominique Lavenier (Tech. Sci. Informatiques, 2005)

Path-Equivalent Removals of epsilon-transitions in a Genomic Weighted Finite Automaton. - Mathieu Giraud; Philippe Veber; Dominique Lavenier (CIAA, 2006)

Domain organization within repeated DNA sequences: application to the study of a family of transposable elements. - Sébastien Tempel; Mathieu Giraud; Dominique Lavenier; Israël-César Lerman; Anne-Sophie Valin; Ivan Couée; Abdelhak El Amrani; Jacques Nicolas (Bioinform., 2006)

Seed-Based Exclusion Method for Non-coding RNA Gene Search. - Jean-Eudes Duchesne; Mathieu Giraud; Nadia El-Mabrouk (COCOON, 2007)

Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware. - Pierre Peterlongo; Laurent Noé; Dominique Lavenier; Gilles Georges; Julien Jacques; Gregory Kucherov; Mathieu Giraud (PPAM, 2007)

Path-Equivalent Developments in Acyclic Weighted Automata. - Mathieu Giraud; Philippe Veber; Dominique Lavenier (Int. J. Found. Comput. Sci., 2007)

Not So Many Runs in Strings. - Mathieu Giraud (LATA, 2008)

Optimal neighborhood indexing for protein similarity search. - Pierre Peterlongo; Laurent Noé; Dominique Lavenier; Van Hoa Nguyen; Gregory Kucherov; Mathieu Giraud (BMC Bioinform., 2008)

GPU Parallelization of Algebraic Dynamic Programming. - Peter Steffen; Robert Giegerich; Mathieu Giraud (PPAM (2), 2009)

Asymptotic behavior of the numbers of runs and microruns. - Mathieu Giraud (Inf. Comput., 2009)

The Number of Runs in a Ternary Word. - Hideo Bannai; Mathieu Giraud; Kazuhiko Kusano; Wataru Matsubara; Ayumi Shinohara; Jamie Simpson (Stringology, 2010)

Rhythm Extraction from Polyphony Symbolic Music. - Florence Levé; Richard Groult; Guillaume Arnaud; Cyril Séguin; Rémi Gaymay; Mathieu Giraud (ISMIR, 2011)

Bit-Parallel Multiple Pattern Matching. - Tuan Tu Tran; Mathieu Giraud; Jean-Stéphane Varré (PPAM (2), 2011)

Parallel Position Weight Matrices algorithms. - Mathieu Giraud; Jean-Stéphane Varré (Parallel Comput., 2011)

Subject and Counter-Subject Detection for Analysis of the Well-Tempered Clavier Fugues. - Mathieu Giraud; Richard Groult; Florence Levé (CMMR, 2012)

Detecting Episodes with Harmonic Sequences for Fugue Analysis. - Mathieu Giraud; Richard Groult; Florence Levé (ISMIR, 2012)

RNA Locally Optimal Secondary Structures. - Azadeh Saffarian; Mathieu Giraud; Antoine de Monte; Hélène Touzet (J. Comput. Biol., 2012)

Fragmentations with Pitch, Rhythm and Parallelism Constraints for Variation Matching. - Mathieu Giraud; Ken Déguernel; Emilios Cambouropoulos (CMMR, 2013)

Querying highly similar sequences. - Carl Barton; Mathieu Giraud; Costas S. Iliopoulos; Thierry Lecroq; Laurent Mouchard; Solon P. Pissis (Int. J. Comput. Biol. Drug Des., 2013)

Searching for alternate RNA structures in genomic sequences. - Azadeh Saffarian; Mathieu Giraud; Hélène Touzet (CMSR@ECCB, 2014)

Towards Modeling Texture in Symbolic Data. - Mathieu Giraud; Florence Levé; Florent Mercier; Marc Rigaudière; Donatien Thorez (ISMIR, 2014)

Algorithmes pour l'analyse de la musique tonale. - Mathieu Giraud; Marc Rigaudière (Tech. Sci. Informatiques, 2014)

Perfect Hashing Structures for Parallel Similarity Searches. - Tuan Tu Tran; Mathieu Giraud; Jean-Stéphane Varré (IPDPS Workshops, 2015)

Comparing Voice and Stream Segmentation Algorithms. - Nicolas Guiomard-Kagan; Mathieu Giraud; Richard Groult; Florence Levé (ISMIR, 2015)

Modeling Musical Structure with Parametric Grammars. - Mathieu Giraud; Slawek Staworko (MCM, 2015)

Computational Fugue Analysis. - Mathieu Giraud; Richard Groult; Emmanuel Leguy; Florence Levé (Comput. Music. J., 2015)

Modeling Alternate RNA Structures in Genomic Sequences. - Azadeh Saffarian; Mathieu Giraud; Hélène Touzet (J. Comput. Biol., 2015)

Compter les globules blancs, analyser les partitions. - Mathieu Giraud (2016)

Computational Analysis of Musical Form. - Mathieu Giraud; Richard Groult; Florence Levé (Computational Music Analysis, 2016)

Improving Voice Separation by Better Connecting Contigs. - Nicolas Guiomard-Kagan; Mathieu Giraud; Richard Groult; Florence Levé (ISMIR, 2016)

Sketching Sonata Form Structure in Selected Classical String Quartets. - Louis Bigo; Mathieu Giraud; Richard Groult; Nicolas Guiomard-Kagan; Florence Levé (ISMIR, 2017)

Relevance of Musical Features for Cadence Detection. - Louis Bigo; Laurent Feisthauer; Mathieu Giraud; Florence Levé (ISMIR, 2018)

Indexing labeled sequences. - Tatiana Rocher; Mathieu Giraud; Mikaël Salson (PeerJ Comput. Sci., 2018)

Modeling and Learning Structural Breaks in Sonata Forms. - Laurent Feisthauer; Louis Bigo; Mathieu Giraud (ISMIR, 2019)

Learning Sonata Form Structure on Mozart's String Quartets. - Pierre Allegraud; Louis Bigo; Laurent Feisthauer; Mathieu Giraud; Richard Groult; Emmanuel Leguy; Florence Levé (Trans. Int. Soc. Music. Inf. Retr., 2019)

Not All Roads Lead to Rome: Pitch Representation and Model Architecture for Automatic Harmonic Analysis. - Gianluca Micchi; Mark Gotham; Mathieu Giraud (Trans. Int. Soc. Music. Inf. Retr., 2020)

Music Cognition: The Complexity of Musical Structure. - Daniel Harasim; Christoph Finkensiep; Louis Bigo; Mathieu Giraud; Florence Levé; David R. W. Sears; Daniel Shanahan; Martin A. Rohrmeier (CogSci, 2021)

What are the most used guitar positions? - Jules Cournut; Louis Bigo; Mathieu Giraud; Nicolas Martin; David Régnier (DLfM, 2021)

I Keep Counting: An Experiment in Human/AI Co-creative Songwriting. - Gianluca Micchi; Louis Bigo; Mathieu Giraud; Richard Groult; Florence Levé (Trans. Int. Soc. Music. Inf. Retr., 2021)

A Corpus Describing Orchestral Texture in First Movements of Classical and Early-Romantic Symphonies. - Dinh-Viet-Toan Le; Mathieu Giraud; Florence Levé; Francesco Maccarini (DLfM, 2022)

Weighted automata computation of edit distances with consolidations and fragmentations. - Mathieu Giraud; Florent Jacquemard (Inf. Comput., 2022)

The 'Measure Map': an inter-operable standard for aligning symbolic music. - Mark Gotham; Johannes Hentschel; Louis Couturier; Nathan Dykeaylen; Martin Rohrmeier; Mathieu Giraud (DLfM, 2023)

The Games We Play: Exploring the Impact of ISMIR on Musicology. - Vanessa Nina Borsan; Mathieu Giraud; Richard Groult (ISMIR, 2023)

Adding Descriptors to Melodies Improves Pattern Matching: A Study on Slovenian Folk Songs. - Vanessa Nina Borsan; Mathieu Giraud; Richard Groult; Thierry Lecroq (ISMIR, 2023)

Co-creative Orchestration of Angeles with Layer Scores and Orchestration Plans. - Francesco Maccarini; Mael Oudin; Mathieu Giraud; Florence Levé (EvoMUSART, 2024)

Interacting with Annotated and Synchronized Music Corpora on the Dezrann Web Platform. - Charles Ballester; Baptiste Bacot; Louis Bigo; Vanessa Nina Borsan; Louis Couturier; Ken Déguernel; Quentin Dinel; Laurent Feisthauer; Klaus Frieler; Mark Gotham; Richard Groult; Johannes Hentschel; et al. (Trans. Int. Soc. Music. Inf. Retr., 2025)