Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks. - Mathieu Lavallée-Adam; Benoit Coulombe; Mathieu Blanchette (J. Comput. Biol., 2010)

Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers. - Shaun S. Sanders; Dale D. O. Martin; Stefanie L. Butland; Mathieu Lavallée-Adam; Diego Calzolari; Chris Kay; John R. Yates III; Michael R. Hayden (PLoS Comput. Biol., 2015)

pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies. - Caitlin M. A. Simopoulos; Zhibin Ning; Xu Zhang; Leyuan Li; Krystal Walker; Mathieu Lavallée-Adam; Daniel Figeys (Bioinform., 2020)

PIGNON: a protein-protein interaction-guided functional enrichment analysis for quantitative proteomics. - Rachel Nadeau; Anastasiia Byvsheva; Mathieu Lavallée-Adam (BMC Bioinform., 2021)

METAbolomics data Balancing with Over-sampling Algorithms (META-BOA): an online resource for addressing class imbalance. - Emily Hashimoto-Roth; Anuradha Surendra; Mathieu Lavallée-Adam; Steffany A. L. Bennett; Miroslava Cuperlovic-Culf (Bioinform., 2022)