TropGENE-DB, a multi-tropical crop information system. - Manuel Ruiz; Mathieu Rouard; Louis Marie Raboin; Marc Lartaud; Pierre Lagoda; Brigitte Courtois (Nucleic Acids Res., 2004)

GreenPhylDB: a database for plant comparative genomics. - Matthieu G. Conte; S. Gaillard; N. Lanau; Mathieu Rouard; Christophe Périn (Nucleic Acids Res., 2008)

The Generation Challenge Programme comparative plant stress-responsive gene catalogue. - Samart Wanchana; Supat Thongjuea; Victor Jun M. Ulat; Mylah Anacleto; Ramil Mauleon; Matthieu G. Conte; Mathieu Rouard; Manuel Ruiz; Nandini Krishnamurthy; Kimmen Sjölander; Theo J. L. van Hintum; Richard M. Bruskiewich (Nucleic Acids Res., 2008)

GreenPhylDB v2.0: comparative and functional genomics in plants. - Mathieu Rouard; Valentin Guignon; Christelle Aluome; Marie-Angélique Laporte; Gaëtan Droc; Christian Walde; Christian M. Zmasek; Christophe Périn; Matthieu G. Conte (Nucleic Acids Res., 2011)

Chado Controller: advanced annotation management with a community annotation system. - Valentin Guignon; Gaëtan Droc; Michael Alaux; Franc-Christophe Baurens; Olivier Garsmeur; Claire Poiron; Tim Carver; Mathieu Rouard; Stéphanie Bocs (Bioinform., 2012)

The Banana Genome Hub. - Gaëtan Droc; Delphine Larivière; Valentin Guignon; Nabila Yahiaoui; Dominique This; Olivier Garsmeur; Alexis Dereeper; Chantal Hamelin; Xavier Argout; Jean-François Dufayard; Juliette Lengelle; Franc-Christophe Baurens; et al. (Database J. Biol. Databases Curation, 2013)

The coffee genome hub: a resource for coffee genomes. - Alexis Dereeper; Stéphanie Bocs; Mathieu Rouard; Valentin Guignon; Sébastien Ravel; Christine Tranchant-Dubreuil; Valérie Poncet; Olivier Garsmeur; Philippe Lashermes; Gaëtan Droc (Nucleic Acids Res., 2015)

MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. - Max Ruas; Valentin Guignon; Guilhem Sempéré; Julie Sardos; Yann Hueber; H. Duvergey; Alain Andrieu; Richard Chase; Christophe Jenny; Tom Hazekamp; Brian M. Irish; K. Jelali; et al. (Database J. Biol. Databases Curation, 2017)

BrAPI - an application programming interface for plant breeding applications. - Peter Selby; Rafael Abbeloos; Jan Erik Backlund; Martin Basterrechea Salido; Guillaume Bauchet; Omar E. Benites-Alfaro; Clayton L. Birkett; Viana C. Calaminos; Pierre Carceller; Guillaume Cornut; Bruno Vasques Costa; Jeremy D. Edwards; et al. (Bioinform., 2019)

Panache: a web browser-based viewer for linearized pangenomes. - Éloi Durant; François Sabot; Matthieu G. Conte; Mathieu Rouard (Bioinform., 2021)

GreenPhylDB v5: a comparative pangenomic database for plant genomes. - Valentin Guignon; Abdel Toure; Gaëtan Droc; Jean-François Dufayard; Matthieu G. Conte; Mathieu Rouard (Nucleic Acids Res., 2021)

GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics. - Marilyne Summo; Aurore Comte; Guillaume Martin; Pierrick Perelle; Eric M. Weitz; Gaëtan Droc; Mathieu Rouard (Database J. Biol. Databases Curation, 2022)

Ten simple rules for developing visualization tools in genomics. - Éloi Durant; Mathieu Rouard; Eric W. Ganko; Cédric Muller; Alan M. Cleary; Andrew D. Farmer; Matthieu G. Conte; François Sabot (PLoS Comput. Biol., 2022)

Collecting and managing in situ banana genetic resources information (Musa spp.) using online resources and citizen science. - Christophe Jenny; Valentin Guignon; Felip Manyer I Ballester; Max Ruas; Mathieu Rouard (Database J. Biol. Databases Curation, 2024)

Navigating COP16's digital sequence information outcomes: What researchers need to do in practice. - Melania Muñoz-García; K. C. Bansal; Yiming Bao; Sarah C. Brinkley; Elena Buzan; David Castle; Martha Lucía Cepeda-Hernández; Solenne Correard; Andrew J. Crawford; Jessica M. da Silva; Manuela da Silva; Sonigitu Ekpe; et al. (Patterns, 2025)