A Probabilistic Derivation of the Partial Least-Squares Algorithm. - Mats G. Gustafsson (J. Chem. Inf. Comput. Sci., 2001)

Prediction of food protein allergenicity: a bioinformatic learning systems approach. - Anna Zorzet; Mats G. Gustafsson; Ulf Hammerling (Silico Biol., 2002)

An analytical series expansion solution to the problem of noncoherent detection. - Daniel E. Asraf; Mats G. Gustafsson (IEEE Trans. Inf. Theory, 2004)

Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins. - Åsa K. Björklund; Daniel Soeria-Atmadja; Anna Zorzet; Ulf Hammerling; Mats G. Gustafsson (Bioinform., 2005)

Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling. - Eva Freyhult; Peteris Prusis; Maris Lapinsh; Jarl E. S. Wikberg; Vincent Moulton; Mats G. Gustafsson (BMC Bioinform., 2005)

Independent Component Analysis Yields Chemically Interpretable Latent Variables in Multivariate Regression. - Mats G. Gustafsson (J. Chem. Inf. Model., 2005)

Detection of multiple transient signals with unknown arrival times. - Daniel E. Asraf; Mats G. Gustafsson (IEEE Trans. Inf. Theory, 2005)

Bayesian detection of periodic mRNA time profiles without use of training examples. - Claes R. Andersson; Anders Isaksson; Mats G. Gustafsson (BMC Bioinform., 2006)

Improved variance estimation of classification performance via reduction of bias caused by small sample size. - Ulrika Wickenberg-Bolin; Hanna Göransson; Mårten Fryknäs; Mats G. Gustafsson; Anders Isaksson (BMC Bioinform., 2006)

Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors. - Claes R. Andersson; Torgeir R. Hvidsten; Anders Isaksson; Mats G. Gustafsson; Jan Komorowski (BMC Syst. Biol., 2007)

In Vitro Drug Sensitivity-Gene Expression Correlations Involve a Tissue of Origin Dependency. - Claes R. Andersson; Mårten Fryknäs; Linda Rickardson; Rolf Larsson; Anders Isaksson; Mats G. Gustafsson (J. Chem. Inf. Model., 2007)

EVALLER: a web server for in silico assessment of potential protein allergenicity. - Alvaro Martinez Barrio; Daniel Soeria-Atmadja; Anders Nistér; Mats G. Gustafsson; Ulf Hammerling; Erik Bongcam-Rudloff (Nucleic Acids Res., 2007)

Cross-validation and bootstrapping are unreliable in small sample classification. - Anders Isaksson; Mikael Wallman; Hanna Göransson; Mats G. Gustafsson (Pattern Recognit. Lett., 2008)

Improving Bayesian credibility intervals for classifier error rates using maximum entropy empirical priors. - Mats G. Gustafsson; Mikael Wallman; Ulrika Wickenberg-Bolin; Hanna Göransson; Mårten Fryknäs; Claes R. Andersson; Anders Isaksson (Artif. Intell. Medicine, 2010)

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements. - Stefan Enroth; Claes R. Andersson; Robin Andersson; Claes Wadelius; Mats G. Gustafsson; Henryk Jan Komorowski (Algorithms Mol. Biol., 2012)

Assessing Relative Bioactivity of Chemical Substances Using Quantitative Molecular Network Topology Analysis. - Anna Edberg; Daniel Soeria-Atmadja; Jonas Laurila Bergman; Fredrik Johansson; Mats G. Gustafsson; Ulf Hammerling (J. Chem. Inf. Model., 2012)

Automated QuantMap for rapid quantitative molecular network topology analysis. - Wesley Schaal; Ulf Hammerling; Mats G. Gustafsson; Ola Spjuth (Bioinform., 2013)

NMR Spectroscopy-Based Metabolic Profiling of Drug-Induced Changes In Vitro Can Discriminate between Pharmacological Classes. - Obaid Aftab; Mikael K. R. Engskog; Jakob Haglöf; Albert Elmsjö; Torbjörn Arvidsson; Curt Pettersson; Ulf Hammerling; Mats G. Gustafsson (J. Chem. Inf. Model., 2014)

COMBImage: a modular parallel processing framework for pairwise drug combination analysis that quantifies temporal changes in label-free video microscopy movies. - Efthymia Chantzi; Malin Jarvius; Mia Niklasson; Anna Segerman; Mats G. Gustafsson (BMC Bioinform., 2018)

Self-tuning density estimation based on Bayesian averaging of adaptive kernel density estimations yields state-of-the-art performance. - Christofer L. Bäcklin; Claes R. Andersson; Mats G. Gustafsson (Pattern Recognit., 2018)

COMBImage2: a parallel computational framework for higher-order drug combination analysis that includes automated plate design, matched filter based object counting and temporal data mining. - Efthymia Chantzi; Malin Jarvius; Mia Niklasson; Anna Segerman; Mats G. Gustafsson (BMC Bioinform., 2019)

Exhaustive in vitro evaluation of the 9-drug cocktail CUSP9 for treatment of glioblastoma. - Efthymia Chantzi; Ulf Hammerling; Mats G. Gustafsson (Comput. Biol. Medicine, 2024)