Large-scale collection and characterization of promoters of human and mouse genes. - Yutaka Suzuki; Riu Yamashita; Matsuyuki Shirota; Yuta Sakakibara; Joe Chiba; Junko Mizushima-Sugano; Alexander E. Kel; Takahiro Arakawa; Piero Carninci; Jun Kawai; Yoshihide Hayashizaki; Toshihisa Takagi; et al. (Silico Biol., 2004)

SAHG, a comprehensive database of predicted structures of all human proteins. - Chie Motono; Junichi Nakata; Ryotaro Koike; Kana Shimizu; Matsuyuki Shirota; Takayuki Amemiya; Kentaro Tomii; Nozomi Nagano; Naofumi Sakaya; Kiyotaka Misoo; Miwa Sato; Akinori Kidera; et al. (Nucleic Acids Res., 2011)

Comprehensive Classification and Diversity Assessment of Atomic Contacts in Protein-Small Ligand Interactions. - Kota Kasahara; Matsuyuki Shirota; Kengo Kinoshita (J. Chem. Inf. Model., 2013)

Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population. - Matsuyuki Shirota; Kengo Kinoshita (Database J. Biol. Databases Curation, 2016)

jMorp: Japanese Multi Omics Reference Panel. - Shu Tadaka; Daisuke Saigusa; Ikuko N. Motoike; Jin Inoue; Yuichi Aoki; Matsuyuki Shirota; Seizo Koshiba; Masayuki Yamamoto; Kengo Kinoshita (Nucleic Acids Res., 2018)

jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population. - Shu Tadaka; Eiji Hishinuma; Shohei Komaki; Ikuko N. Motoike; Junko Kawashima; Daisuke Saigusa; Jin Inoue; Jun Takayama; Yasunobu Okamura; Yuichi Aoki; Matsuyuki Shirota; Akihito Otsuki; et al. (Nucleic Acids Res., 2021)