Inferring Horizontal Gene Transfer. - Matt Ravenhall; Nives Skunca; Florent Lassalle; Christophe Dessimoz (PLoS Comput. Biol., 2015)

PrimedRPA: primer design for recombinase polymerase amplification assays. - Matthew Higgins; Matt Ravenhall; Daniel Ward; Jody Phelan; Amy Ibrahim; Matthew S. Forrest; Taane G. Clark; Susana G. Campino (Bioinform., 2019)

SV-Pop: population-based structural variant analysis and visualization. - Matt Ravenhall; Susana G. Campino; Taane G. Clark (BMC Bioinform., 2019)