The UCSC Genome Browser Database. - Donna Karolchik; Robert Baertsch; Mark Diekhans; Terrence S. Furey; Angela S. Hinrichs; Yontao Lu; Krishna M. Roskin; Matt Schwartz; Charles W. Sugnet; Daryl J. Thomas; Ryan J. Weber; David Haussler; et al. (Nucleic Acids Res., 2003)

Integration of multimodal RNA-seq data for prediction of kidney cancer survival. - Matt Schwartz; Martin Park; John H. Phan; May D. Wang (BIBM, 2015)

Bringing a Visual Memory Model to VS Code. - Matt Schwartz; Nathan H. Bean; Joshua Levi Weese; Russell Feldhausen (SIGCSE (2), 2024)

EndoDINO: A Foundation Model for GI Endoscopy. - Patrick Dermyer; Angad Kalra; Matt Schwartz (CoRR, 2025)