Evolution-Communication P Systems. - Matteo Cavaliere (WMC-CdeA, 2002)

An Application of Dynamic P Systems: Generating Context-Free Languages. - Gemma Bel Enguix; Matteo Cavaliere; Rodica Ceterchi; Radu Gramatovici; Carlos Martín-Vide (WMC-CdeA, 2002)

Proton Pumping P Systems. - Artiom Alhazov; Matteo Cavaliere (Workshop on Membrane Computing, 2003)

Evolution and Observation: A New Way to Look at Membrane Systems. - Matteo Cavaliere; Peter Leupold (Workshop on Membrane Computing, 2003)

Modelling biological processes by using a probabilistic P system software. - Ioan I. Ardelean; Matteo Cavaliere (Nat. Comput., 2003)

Forbidding and enforcing in membrane computing. - Matteo Cavaliere; Natasa Jonoska (Nat. Comput., 2003)

Computing by Observing Bio-systems: The Case of Sticker Systems. - Artiom Alhazov; Matteo Cavaliere (DNA, 2004)

Biomolecular Implementation of Computing Devices with Unbounded Memory. - Matteo Cavaliere; Natasa Jonoska; Sivan Yogev; Ron Piran; Ehud Keinan; Nadrian C. Seeman (DNA, 2004)

Evolution and Observation: A Non-standard Way to Accept Formal Languages. - Matteo Cavaliere; Peter Leupold (MCU, 2004)

Inhibiting/De-inhibiting Rules in P Systems. - Matteo Cavaliere; Mihai Ionescu; Tseren-Onolt Ishdorj (Workshop on Membrane Computing, 2004)

Time-Independent P Systems. - Matteo Cavaliere; Dragos Sburlan (Workshop on Membrane Computing, 2004)

P Systems with Symport/Antiport of Rules. - Matteo Cavaliere; Daniela Genova (J. Univers. Comput. Sci., 2004)

Evolution and observation–a non-standard way to generate formal languages. - Matteo Cavaliere; Peter Leupold (Theor. Comput. Sci., 2004)

Recognizing DNA Splicing. - Matteo Cavaliere; Natasa Jonoska; Peter Leupold (DNA, 2005)

Time and Synchronization in Membrane Systems. - Matteo Cavaliere; Dragos Sburlan (Fundam. Informaticae, 2005)

Computing using signals: from cells to P systems. - Ioan I. Ardelean; Matteo Cavaliere; Dragos Sburlan (Soft Comput., 2005)

Modelling Cellular Processes Using Membrane Systems with Peripheral and Integral Proteins. - Matteo Cavaliere; Sean Sedwards (CMSB, 2006)

Modeling and Simulating Biological Processes with Stochastic Multiset Rewriting. - Matteo Cavaliere; Sean Sedwards (Simulation and Verification of Dynamic Systems, 2006)

Computing by Only Observing. - Matteo Cavaliere; Pierluigi Frisco; Hendrik Jan Hoogeboom (Developments in Language Theory, 2006)

Membrane Systems with External Control. - Robert Brijder; Matteo Cavaliere; Agustin Riscos-Núñez; Grzegorz Rozenberg; Dragos Sburlan (Workshop on Membrane Computing, 2006)

Partial Knowledge in Membrane Systems: A Logical Approach. - Matteo Cavaliere; Radu Mardare (Workshop on Membrane Computing, 2006)

Modeling Respiration in Bacteria and Respiration/Photosynthesis Interaction in Cyanobacteria Using a P System Simulator. - Matteo Cavaliere; Ioan I. Ardelean (Applications of Membrane Computing, 2006)

Membrane Systems with Marked Membranes. - Robert Brijder; Matteo Cavaliere; Agustin Riscos-Núñez; Grzegorz Rozenberg; Dragos Sburlan (MeCBIC@ICALP, 2006)

Membrane Systems with Peripheral Proteins: Transport and Evolution. - Matteo Cavaliere; Sean Sedwards (MeCBIC@ICALP, 2006)

Observation of String-Rewriting Systems. - Matteo Cavaliere; Peter Leupold (Fundam. Informaticae, 2006)

Further results on time-free P systems. - Matteo Cavaliere; Vincenzo Deufemia (Int. J. Found. Comput. Sci., 2006)

Communication Membrane Systems with Active Symports. - Robert Brijder; Matteo Cavaliere; Agustin Riscos-Núñez; Grzegorz Rozenberg; Dragos Sburlan (J. Autom. Lang. Comb., 2006)

Event-Related Outputs of Computations in P Systems. - Matteo Cavaliere; Rudolf Freund; Alexander Leitsch; Gheorghe Paun (J. Autom. Lang. Comb., 2006)

Asynchronous Spiking Neural P Systems: Decidability and Undecidability. - Matteo Cavaliere; Ömer Egecioglu; Oscar H. Ibarra; Mihai Ionescu; Gheorghe Paun; Sara Woodworth (DNA, 2007)

Multiset random context grammars, checkers, and transducers. - Matteo Cavaliere; Rudolf Freund; Marion Oswald; Dragos Sburlan (Theor. Comput. Sci., 2007)

Computing by Observing: A Brief Survey. - Matteo Cavaliere (CiE, 2008)

Complexity through the Observation of Simple Systems - Matteo Cavaliere; Peter Leupold (CSP, 2008)

Cell Cycle and Tumor Growth in Membrane Systems with Peripheral Proteins. - Tommaso Mazza; Matteo Cavaliere (MeCBIC, 2008)

A Logical Characterization of Robustness, Mutants and Species in Colonies of Agents. - Radu Mardare; Matteo Cavaliere; Sean Sedwards (Int. J. Found. Comput. Sci., 2008)

Experiments on the reliability of stochastic spiking neural P systems. - Matteo Cavaliere; Ivan Mura (Nat. Comput., 2008)

Membrane systems with proteins embedded in membranes. - Robert Brijder; Matteo Cavaliere; Agustin Riscos-Núñez; Grzegorz Rozenberg; Dragos Sburlan (Theor. Comput. Sci., 2008)

A multiset-based model of synchronizing agents: Computability and robustness. - Matteo Cavaliere; Radu Mardare; Sean Sedwards (Theor. Comput. Sci., 2008)

Decision problems in membrane systems with peripheral proteins, transport and evolution. - Matteo Cavaliere; Sean Sedwards (Theor. Comput. Sci., 2008)

Computing by Observing Changes. - Matteo Cavaliere; Peter Leupold (IWNC, 2009)

DNA splicing: computing by observing. - Matteo Cavaliere; Natasa Jonoska; Peter Leupold (Nat. Comput., 2009)

Asynchronous spiking neural P systems. - Matteo Cavaliere; Oscar H. Ibarra; Gheorghe Paun; Ömer Egecioglu; Mihai Ionescu; Sara Woodworth (Theor. Comput. Sci., 2009)

Computing by observing. - Matteo Cavaliere (Scholarpedia, 2010)

An Observer-Based de-Quantisation of Deutsch's Algorithm. - Cristian S. Calude; Matteo Cavaliere; Radu Mardare (Int. J. Found. Comput. Sci., 2011)

On aggregation in multiset-based self-assembly of graphs. - Francesco Bernardini; Robert Brijder; Matteo Cavaliere; Giuditta Franco; Hendrik Jan Hoogeboom; Grzegorz Rozenberg (Nat. Comput., 2011)

Computing by observing: Simple systems and simple observers. - Matteo Cavaliere; Peter Leupold (Theor. Comput. Sci., 2011)

The Stochastic Loss of Spikes in Spiking Neural P Systems: Design and Implementation of Reliable Arithmetic Circuits. - Zihan Xu; Matteo Cavaliere; Pei An; Sarma B. K. Vrudhula; Yu Cao 001 (Fundam. Informaticae, 2014)

The Evolutionary Resilience of Distributed Cellular Computing. - Matteo Cavaliere; Alvaro Sanchez (Int. Conf. on Membrane Computing, 2016)

Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization. - Goksel Misirli; Matteo Cavaliere; William Waites; Matthew R. Pocock; Curtis Madsen; Owen Gilfellon; Ricardo Honorato-Zimmer; Paolo Zuliani; Vincent Danos; Anil Wipat (Bioinform., 2016)

An Information-Theoretic Measure for Patterning in Epithelial Tissues. - William Waites; Matteo Cavaliere; Elise Cachat; Vincent Danos; Jamie A. Dvies (IEEE Access, 2018)

Annotations for Rule-Based Models. - Matteo Cavaliere; Vincent Danos; Ricardo Honorato-Zimmer; William Waites (CoRR, 2018)

Compiling Combinatorial Genetic Circuits with Semantic Inference. - William Waites; Goksel Misirli; Matteo Cavaliere; Vincent Danos; Anil Wipat (CoRR, 2018)

Preface. - Matteo Cavaliere; Alfonso Rodríguez-Patón (Nat. Comput., 2018)

Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis. - Joel Dokmegang; Hanh Nguyen; Elena Kardash; Thierry Savy; Matteo Cavaliere; Nadine Peyriéras; René Doursat (Bioinform., 2021)

Automatic Design of Spiking Neural P Systems Based on Genetic Algorithms. - Jianping Dong; Michael Stachowicz; Gexiang Zhang; Matteo Cavaliere; Haina Rong; Prithwineel Paul (Int. J. Unconv. Comput., 2021)

Evolutionary game theory in a cell: A membrane computing approach. - Pedro García-Victoria; Matteo Cavaliere; Miguel Angel Gutiérrez-Naranjo; Miguel Cárdenas-Montes (Inf. Sci., 2022)

Information-driven cooperation on adaptive cyber-physical systems. - Guoli Yang; Yu'e Wu; Matteo Cavaliere (Appl. Math. Comput., 2024)

Machine Learning for Evolutionary Graph Theory. - Guoli Yang; Matteo Cavaliere; Mingtao Zhang; Giovanni Masala; Adam Miles; Mengzhu Wang (CoRR, 2025)