Extraction, integration and analysis of alternative splicing and protein structure distributed information. - Matteo D'Antonio; Marco Masseroli (BMC Bioinform., 2009)

Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes. - Adnan S. Syed; Matteo D'Antonio; Francesca D. Ciccarelli (Nucleic Acids Res., 2010)

Modification of Gene Duplicability during the Evolution of Protein Interaction Network. - Matteo D'Antonio; Francesca D. Ciccarelli (PLoS Comput. Biol., 2011)

Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes. - Matteo D'Antonio; Vera Pendino; Shruti Sinha; Francesca D. Ciccarelli (Nucleic Acids Res., 2012)

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes. - Omer An; Vera Pendino; Matteo D'Antonio; Emanuele Ratti; Marco Gentilini; Francesca D. Ciccarelli (Database J. Biol. Databases Curation, 2014)

In heart failure reactivation of RNA-binding proteins is associated with the expression of 1, 523 fetal-specific isoforms. - Matteo D'Antonio; Jennifer P. Nguyen; Timothy D. Arthur; Hiroko Matsui; Margaret K. R. Donovan; Agnieszka D'Antonio-Chronowska; Kelly A. Frazer (PLoS Comput. Biol., 2022)

Haptools: a toolkit for admixture and haplotype analysis. - Arya R. Massarat; Michael Lamkin; Ciara Reeve; Amy L. Williams; Matteo D'Antonio; Melissa Gymrek (Bioinform., 2023)