On the active site of mononuclear B1 metallo β-lactamases: a computational study. - Jacopo Sgrignani; Alessandra Magistrato; Matteo Dal Peraro; Alejandro J. Vila; Paolo Carloni; Roberta Pierattelli (J. Comput. Aided Mol. Des., 2012)

Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations. - Thomas Lemmin; Cinque S. Soto; Graham Clinthorne; William F. DeGrado; Matteo Dal Peraro (PLoS Comput. Biol., 2013)

LipidBuilder: A Framework To Build Realistic Models for Biological Membranes. - Christophe Bovigny; Giorgio Tamò; Thomas Lemmin; Nicolas Maïno; Matteo Dal Peraro (J. Chem. Inf. Model., 2015)

Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server. - Luciano A. Abriata; Christophe Bovigny; Matteo Dal Peraro (BMC Bioinform., 2016)

Erratum to: Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server. - Luciano A. Abriata; Christophe Bovigny; Matteo Dal Peraro (BMC Bioinform., 2016)

About the need to make computational models of biological macromolecules available and discoverable. - Luciano A. Abriata; Rosalba Lepore; Matteo Dal Peraro (Bioinform., 2020)

Will Cryo-Electron Microscopy Shift the Current Paradigm in Protein Structure Prediction? - Luciano A. Abriata; Matteo Dal Peraro (J. Chem. Inf. Model., 2020)

State-of-the-art web services for de novo protein structure prediction. - Luciano A. Abriata; Matteo Dal Peraro (Briefings Bioinform., 2021)

CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles. - Sylvain Träger; Giorgio Tamò; Deniz Aydin; Giulia Fonti; Martina Audagnotto; Matteo Dal Peraro (Bioinform., 2021)

Democratizing interactive, immersive experiences for science education with WebXR. - Fabio J. Cortes Rodriguez; Matteo Dal Peraro; Luciano A. Abriata (Nat. Comput. Sci., 2021)

MolecularWebXR: Multiuser discussions about chemistry and biology in immersive and inclusive VR. - Fabio J. Cortes Rodriguez; Gianfranco Frattini; Fernando Teixeira Pinto Meireles; Danae A. Terrien; Sergio Cruz-Leon; Matteo Dal Peraro; Eva Schier; Diego M. Moreno; Luciano A. Abriata (CoRR, 2023)

Analysis of Integrator-Differentiator Transimpedance Amplifiers: Speed and Gain Tradeoff Introduced by Parasitic Capacitances. - Mehdi Saberi; Chan Cao; Matteo Dal Peraro; Alexandre Schmid (IEEE Trans. Instrum. Meas., 2025)