A Scalable Algorithm to Explore the Gibbs Energy Landscape of Genome-Scale Metabolic Networks. - Daniele De Martino; Matteo Figliuzzi; Andrea De Martino; Enzo Marinari (PLoS Comput. Biol., 2012)

Probing the Limits to MicroRNA-Mediated Control of Gene Expression. - Araks Martirosyan; Matteo Figliuzzi; Enzo Marinari; Andrea De Martino (PLoS Comput. Biol., 2016)

A multi-scale coevolutionary approach to predict interactions between protein domains. - Giancarlo Croce; Thomas Gueudré; Maria Ruiz-Cuevas; Victoria Keidel; Matteo Figliuzzi; Hendrik Szurmant; Martin Weigt (PLoS Comput. Biol., 2019)