Development of new strategies for the analysis of human genetic variation. - Matteo Fumagalli 002 (2011)

ngsTools: methods for population genetics analyses from next-generation sequencing data. - Matteo Fumagalli 002; Filipe G. Vieira; Tyler Linderoth; Rasmus Nielsen (Bioinform., 2014)

ngsLD: evaluating linkage disequilibrium using genotype likelihoods. - Emma A. Fox; Alison E. Wright; Matteo Fumagalli 002; Filipe G. Vieira (Bioinform., 2019)

ImaGene: a convolutional neural network to quantify natural selection from genomic data. - Luis Torada; Lucrezia Lorenzon; Alice Beddis; Ulas Isildak; Linda Pattini; Sara Mathieson; Matteo Fumagalli 002 (BMC Bioinform., 2019)