Dynamic Scalable Visualization for Collaborative Scientific Applications. - Kai Li 001; Matthew A. Hibbs; Grant Wallace; Olga G. Troyanskaya (IPDPS, 2005)

Visualization methods for statistical analysis of microarray clusters. - Matthew A. Hibbs; Nathaniel C. Dirksen; Kai Li 001; Olga G. Troyanskaya (BMC Bioinform., 2005)

Tools and Applications for Large-Scale Display Walls. - Grant Wallace; Otto J. Anshus; Peng Bi; Han Chen; Yuqun Chen; Douglas W. Clark; Perry R. Cook; Adam Finkelstein; Thomas A. Funkhouser; Anoop Gupta; Matthew A. Hibbs; Kai Li 001; et al. (IEEE Computer Graphics and Applications, 2005)

A scalable method for integration and functional analysis of multiple microarray datasets. - Curtis Huttenhower; Matthew A. Hibbs; Chad L. Myers; Olga G. Troyanskaya (Bioinform., 2006)

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. - Rachel S. G. Sealfon; Matthew A. Hibbs; Curtis Huttenhower; Chad L. Myers; Olga G. Troyanskaya (BMC Bioinform., 2006)

Scalable, Dynamic Analysis and Visualization for Genomic Datasets. - Grant Wallace; Matthew A. Hibbs; Maitreya J. Dunham; Rachel S. G. Sealfon; Olga G. Troyanskaya; Kai Li 001 (IPDPS, 2007)

Viewing the Larger Context of Genomic Data through Horizontal Integration. - Matthew A. Hibbs; Grant Wallace; Maitreya J. Dunham; Kai Li 001; Olga G. Troyanskaya (IV, 2007)

Exploring the functional landscape of gene expression: directed search of large microarray compendia. - Matthew A. Hibbs; David C. Hess; Chad L. Myers; Curtis Huttenhower; Kai Li 001; Olga G. Troyanskaya (Bioinform., 2007)

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. - Curtis Huttenhower; Avi I. Flamholz; Jessica N. Landis; Sauhard Sahi; Chad L. Myers; Kellen L. Olszewski; Matthew A. Hibbs; Nathan O. Siemers; Olga G. Troyanskaya; Hilary A. Coller (BMC Bioinform., 2007)

The effects of pre-processing and parameter choices on searches through large gene expression data collections. - Matthew A. Hibbs (GENSiPS, 2009)

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. - Curtis Huttenhower; Matthew A. Hibbs; Chad L. Myers; Amy A. Caudy; David C. Hess; Olga G. Troyanskaya (Bioinform., 2009)

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis. - Matthew A. Hibbs; Chad L. Myers; Curtis Huttenhower; David C. Hess; Kai Li 001; Amy A. Caudy; Olga G. Troyanskaya (PLoS Comput. Biol., 2009)

Functional Genomics Complements Quantitative Genetics in Identifying Disease-Gene Associations. - Yuanfang Guan; Cheryl L. Ackert-Bicknell; Braden Kell; Olga G. Troyanskaya; Matthew A. Hibbs (PLoS Comput. Biol., 2010)

Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes. - Yuanfang Guan; Dmitriy Gorenshteyn; Margit Burmeister; Aaron K. Wong; John C. Schimenti; Mary Ann Handel; Carol J. Bult; Matthew A. Hibbs; Olga G. Troyanskaya (PLoS Comput. Biol., 2012)