High-throughput prediction of protein antigenicity using protein microarray data. - Christophe N. Magnan; Michael Zeller; Matthew A. Kayala; Adam Vigil; Arlo Z. Randall; Philip L. Felgner; Pierre Baldi (Bioinform., 2010)

A Machine Learning Approach to Predict Chemical Reactions. - Matthew A. Kayala; Pierre Baldi (NIPS, 2011)

Learning to Predict Chemical Reactions. - Matthew A. Kayala; Chloé-Agathe Azencott; Jonathan H. Chen; Pierre Baldi (J. Chem. Inf. Model., 2011)

ReactionPredictor: Prediction of Complex Chemical Reactions at the Mechanistic Level Using Machine Learning. - Matthew A. Kayala; Pierre Baldi (J. Chem. Inf. Model., 2012)

Cyber-T web server: differential analysis of high-throughput data. - Matthew A. Kayala; Pierre Baldi (Nucleic Acids Res., 2012)