Hybrid Programming Using OpenSHMEM and OpenACC. - Matthew B. Baker; Swaroop Pophale; Jean-Charles Vasnier; Haoqiang Jin; Oscar R. Hernandez (OpenSHMEM, 2014)

UCX: An Open Source Framework for HPC Network APIs and Beyond. - Pavel Shamis; Manjunath Gorentla Venkata; M. Graham Lopez; Matthew B. Baker; Oscar R. Hernandez; Yossi Itigin; Mike Dubman; Gilad Shainer; Richard L. Graham; Liran Liss; Yiftah Shahar; Sreeram Potluri; et al. (Hot Interconnects, 2015)

Parallelizing the Smith-Waterman Algorithm Using OpenSHMEM and MPI-3 One-Sided Interfaces. - Matthew B. Baker; Aaron Welch; Manjunath Gorentla Venkata (OpenSHMEM, 2015)

Exploring OpenSHMEM Model to Program GPU-based Extreme-Scale Systems. - Sreeram Potluri; Davide Rossetti; Donald Becker; Duncan Poole; Manjunath Gorentla Venkata; Oscar R. Hernandez; Pavel Shamis; M. Graham Lopez; Matthew B. Baker; Wendy Poole (OpenSHMEM, 2015)

OpenSHMEM-UCX: Evaluation of UCX for Implementing OpenSHMEM Programming Model. - Matthew B. Baker; Ferrol Aderholdt; Manjunath Gorentla Venkata; Pavel Shamis (OpenSHMEM, 2016)

Merged Requests for Better Performance and Productivity in Multithreaded OpenSHMEM. - Swen Boehm; Swaroop Pophale; Matthew B. Baker; Manjunath Gorentla Venkata (OpenSHMEM, 2017)

Evaluating Contexts in OpenSHMEM-X Reference Implementation. - Aurélien Bouteiller; Swaroop Pophale; Swen Boehm; Matthew B. Baker; Manjunath Gorentla Venkata (OpenSHMEM, 2017)

Oak Ridge OpenSHMEM Benchmark Suite. - Thomas J. Naughton; Ferrol Aderholdt; Matthew B. Baker; Swaroop Pophale; Manjunath Gorentla Venkata; Neena Imam (OpenSHMEM, 2018)

Highly Interactive, Steered Scientific Workflows on HPC Systems: Optimizing Design Solutions. - John R. Ossyra; Ada Sedova; Matthew B. Baker; Jeremy C. Smith (ISC Workshops, 2019)

Are we witnessing the spectre of an HPC meltdown? - Verónica G. Vergara Larrea; Michael J. Brim; Wayne Joubert; Swen Boehm; Matthew B. Baker; Oscar R. Hernandez; Sarp Oral; James Simmons; Don Maxwell (Concurr. Comput. Pract. Exp., 2019)

Co-designing OpenMP Features Using OMPT and Simulation Tools. - Matthew B. Baker; Oscar R. Hernandez; Jeffrey Young 001 (IWOMP, 2020)

Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19. - Atanu Acharya; Rupesh Agarwal; Matthew B. Baker; Jérôme Baudry; Debsindhu Bhowmik; Swen Böhm; Kendall G. Byler; Sam Yen-Chi Chen; Leighton Coates; Connor J. Cooper; Omar Demerdash; Isabella Daidone; et al. (J. Chem. Inf. Model., 2020)

Scaling SQL to the Supercomputer for Interactive Analysis of Simulation Data. - Jens Glaser; Felipe Aramburú; William Malpica; Benjamín Hernández; Matthew B. Baker; Rodrigo Aramburú (SMC, 2021)

Supercomputing Pipelines Search for Therapeutics Against COVID-19. - Josh Vincent Vermaas; Ada Sedova; Matthew B. Baker; Swen Boehm; David M. Rogers 001; Jeff Larkin; Jens Glaser; Micholas Dean Smith; Oscar R. Hernandez; Jeremy C. Smith (Comput. Sci. Eng., 2021)

High-throughput virtual laboratory for drug discovery using massive datasets. - Jens Glaser; Josh Vincent Vermaas; David M. Rogers 001; Jeff Larkin; Scott LeGrand; Swen Boehm; Matthew B. Baker; Aaron Scheinberg; Andreas F. Tillack; Mathialakan Thavappiragasam; Ada Sedova; Oscar R. Hernandez (Int. J. High Perform. Comput. Appl., 2021)

Towards a Standard Process Management Infrastructure for Workflows Using Python. - Wael R. Elwasif; Thomas J. Naughton; Matthew B. Baker (PDCAT, 2022)