Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome. - Steven N. Steinway; Matthew B. Biggs; Thomas P. Loughran Jr.; Jason A. Papin; Réka Albert (PLoS Comput. Biol., 2015)

Metabolic network-guided binning of metagenomic sequence fragments. - Matthew B. Biggs; Jason A. Papin (Bioinform., 2016)

Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA. - Matthew B. Biggs; Jason A. Papin (PLoS Comput. Biol., 2017)