Designing and Evaluating Scientific Workflows for Big Data Interactions. - Ronak Etemadpour; Matthew Bomhoff; Eric Lyons 002; Paul Murray; Angus G. Forbes (BDVA, 2015)

FractBias: a graphical tool for assessing fractionation bias following polyploidy. - Blake L. Joyce; Asher Haug-Baltzell; Sean Davey; Matthew Bomhoff; James C. Schnable; Eric Lyons 002 (Bioinform., 2017)

Libra: Improved Partitioning Strategies for Massive Comparative Metagenomics Analysis. - Illyoung Choi; Alise J. Ponsero; Ken Youens-Clark; Matthew Bomhoff; Bonnie L. Hurwitz; John H. Hartman (ScienceCloud@HPDC, 2018)

Chickspress: a resource for chicken gene expression. - Fiona M. McCarthy; Ken Pendarvis; Amanda M. Cooksey; Cathy R. Gresham; Matt Bomhoff; Sean Davey; Eric Lyons 002; Tad S. Sonstegard; Susan M. Bridges; Shane C. Burgess (Database J. Biol. Databases Curation, 2019)

Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data. - Alise J. Ponsero; Matthew Bomhoff; Kai Lewis Blumberg; Ken Youens-Clark; Nina M. Herz; Elisha M. Wood-Charlson; Edward F. Delong; Bonnie L. Hurwitz (Nucleic Acids Res., 2021)