trieFinder: an efficient program for annotating digital gene expression (DGE) tags. - Gabriel Renaud; Matthew C. LaFave; Jin Liang; Tyra G. Wolfsberg; Shawn M. Burgess (BMC Bioinform., 2014)

GeIST: a pipeline for mapping integrated DNA elements. - Matthew C. LaFave; Gaurav K. Varshney; Shawn M. Burgess (Bioinform., 2015)