An Interactive Analysis and Exploration Tool for Epigenomic Data. - Hamid Younesy; Cydney B. Nielsen; Torsten Möller; Olivia Alder; Rebecca Cullum; Matthew C. Lorincz; Mohammad M. Karimi; Steven J. M. Jones (Comput. Graph. Forum, 2013)

ALEA: a toolbox for allele-specific epigenomics analysis. - Hamid Younesy; Torsten Möller; Alireza Heravi Moussavi; Jeffrey B. Cheng; Joseph F. Costello; Matthew C. Lorincz; Mohammad M. Karimi; Steven J. M. Jones (Bioinform., 2014)

VisRseq: R-based visual framework for analysis of sequencing data. - Hamid Younesy; Torsten Möller; Matthew C. Lorincz; Mohammad M. Karimi; Steven J. M. Jones (BMC Bioinform., 2015)

ChAsE: chromatin analysis and exploration tool. - Hamid Younesy; Cydney B. Nielsen; Matthew C. Lorincz; Steven J. M. Jones; Mohammad M. Karimi; Torsten Möller (Bioinform., 2016)