starfish: scalable pipelines for image-based transcriptomics. - Shannon Axelrod; Matthew Cai; Ambrose J. Carr; Jeremy Freeman; Deep Ganguli; Justin T. Kiggins; Brian Long; Tony Tung; Kevin A. Yamauchi (J. Open Source Softw., 2021)

CyberGym: Evaluating AI Agents' Cybersecurity Capabilities with Real-World Vulnerabilities at Scale. - Zhun Wang; Tianneng Shi; Jingxuan He; Matthew Cai; Jialin Zhang; Dawn Song (CoRR, 2025)