Controllability of Brain Networks. - Shi Gu; Fabio Pasqualetti; Matthew Cieslak; Scott T. Grafton; Danielle S. Bassett (CoRR, 2014)

A reeb graph approach to tractography. - Jonathan Sun; Matthew Cieslak; Scott T. Grafton; Subhash Suri (SIGSPATIAL/GIS, 2015)

Regional White Matter Variation Associated with Domain-specific Metacognitive Accuracy. - Benjamin Baird; Matthew Cieslak; Jonathan Smallwood; Scott T. Grafton; Jonathan W. Schooler (J. Cogn. Neurosci., 2015)

Clustering brain-network-connectivity states using kernel partial correlations. - Konstantinos Slavakis; Shiva Salsabilian; David S. Wack; Sarah Feldt Muldoon; Henry E. Baidoo-Williams; Jean M. Vettel; Matthew Cieslak; Scott T. Grafton (ACSSC, 2016)

Stimulation-Based Control of Dynamic Brain Networks. - Sarah Feldt Muldoon; Fabio Pasqualetti; Shi Gu; Matthew Cieslak; Scott T. Grafton; Jean M. Vettel; Danielle S. Bassett (PLoS Comput. Biol., 2016)

A candidate neuromechanical biomarker and dosimeter for monitoring cumulative head impact trauma. - John D. Ralston; Jonathan Woodard; Matthew Cieslak; Alex Asturias; Wendy Meiring; Scott T. Grafton (BHI, 2017)

Wearable sensors for head impact dosimetry. - John D. Ralston; Wendy Meiring; Matthew Cieslak; Alex Asturias; Scott T. Grafton (IEEE SENSORS, 2017)

Riemannian-geometry-based modeling and clustering of network-wide non-stationary time series: The brain-network case. - Konstantinos Slavakis; Shiva Salsabilian; David S. Wack; Sarah Feldt Muldoon; Henry E. Baidoo-Williams; Jean M. Vettel; Matthew Cieslak; Scott T. Grafton (CoRR, 2017)

Optimal trajectories of brain state transitions. - Shi Gu; Richard F. Betzel; Marcelo Gomes Mattar; Matthew Cieslak; Philip R. Delio; Scott T. Grafton; Fabio Pasqualetti; Danielle S. Bassett (NeuroImage, 2017)

Compositional measures of diffusion anisotropy and asymmetry. - Matthew Cieslak; Wendy Meiring; Tegan Brennan; Clint Greene; Lukas J. Volz; Jean M. Vettel; Subhash Suri; Scott T. Grafton (ISBI, 2018)

Analytic tractography: A closed-form solution for estimating local white matter connectivity with diffusion MRI. - Matthew Cieslak; Tegan Brennan; Wendy Meiring; Lukas J. Volz; Clint Greene; Alexander Asturias; Subhash Suri; Scott T. Grafton (NeuroImage, 2018)

Spatial coherence of oriented white matter microstructure: Applications to white matter regions associated with genetic similarity. - Haraldur Tómas Hallgrímsson; Matthew Cieslak; Luca Foschini 002; Scott T. Grafton; Ambuj K. Singh (NeuroImage, 2018)

Clustering Brain-Network Time Series by Riemannian Geometry. - Konstantinos Slavakis; Shiva Salsabilian; David S. Wack; Sarah Feldt Muldoon; Henry E. Baidoo-Williams; Jean M. Vettel; Matthew Cieslak; Scott T. Grafton (IEEE Trans. Signal Inf. Process. over Networks, 2018)

nipy/nibabel: 2.4.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nibabel: 2.4.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nibabel: 2.5.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.2.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nibabel: 2.5.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.2.3. - Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0-rc1. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0rc1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0rc2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.4.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; David Gage Ellis; Benjamin Yvernault; Carlo Hämäläinen; Michael Philipp Notter; Taylor Salo; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nipype: 1.4.1. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.4.2. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nibabel: 3.0.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nibabel: 2.5.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nibabel: 3.1.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; et al. (Zenodo, 2020)

nipy/nibabel: 3.1.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; et al. (Zenodo, 2020)

nipy/nipype: 1.5.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nipype: 1.5.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nibabel: 3.2.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2020)

nipy/nibabel: 3.2.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2020)

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform. - Tinashe M. Tapera; Matthew Cieslak; Max Bertolero; Azeez Adebimpe; Geoffrey Karl Aguirre; Ellyn R. Butler; Philip A. Cook; Diego Davila; Mark A. Elliott; Sophia Linguiti; Kristin Murtha; William Tackett; et al. (Frontiers Neuroinformatics, 2021)

DataLad: distributed system for joint management of code, data, and their relationship. - Yaroslav O. Halchenko; Kyle Meyer; Benjamin Poldrack; Debanjum Singh Solanky; Adina S. Wagner; Jason Gors; Dave MacFarlane; Dorian Pustina; Vanessa V. Sochat; Satrajit S. Ghosh; Christian Mönch; Christopher J. Markiewicz; et al. (J. Open Source Softw., 2021)

nipy/nipype: 1.7.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2021)

Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets. - Sydney Covitz; Tinashe M. Tapera; Azeez Adebimpe; Aaron Alexander-Bloch; Maxwell A. Bertolero; Eric Feczko; Alexandre R. Franco; Raquel E. Gur; Ruben C. Gur; Timothy Hendrickson; Audrey Houghton; Kahini Mehta; et al. (NeuroImage, 2022)

Retinal ganglion cell endowment is correlated with optic tract fiber cross section, not density. - Huseyin O. Taskin; Yuchuan Qiao; Valerie J. Sydnor; Matthew Cieslak; Edda B. Haggerty; Theodore D. Satterthwaite; Jessica I. W. Morgan; Yonggang Shi; Geoffrey Karl Aguirre (NeuroImage, 2022)

nipy/nipype: 1.7.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nibabel: 3.2.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nibabel: 4.0.0rc0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nibabel. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nipype: 1.8.3. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nibabel: 5.0.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

nipy/nibabel: 5.0.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

nipy/nibabel: 5.1.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

ModelArray: An R package for statistical analysis of fixel-wise data. - Chenying Zhao; Tinashe M. Tapera; Joëlle Bagautdinova; Josiane Bourque; Sydney Covitz; Raquel E. Gur; Ruben C. Gur; Bart Larsen; Kahini Mehta; Steven L. Meisler; Kristin Murtha; John Muschelli; et al. (NeuroImage, 2023)

nipy/nibabel: 5.2.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; et al. (Zenodo, 2023)

ReeBundle: A Method for Topological Modeling of White Matter Pathways Using Diffusion MRI. - S. Shailja; Vikram Bhagavatula; Matthew Cieslak; Jean M. Vettel; Scott T. Grafton; B. S. Manjunath (IEEE Trans. Medical Imaging, 2023)

nipy/nibabel: 5.2.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; et al. (Zenodo, 2024)

nipy/nibabel: 5.3.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Dimitri Papadopoulos Orfanos; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; et al. (Zenodo, 2024)

nipy/nibabel: 5.3.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Dimitri Papadopoulos Orfanos; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; et al. (Zenodo, 2024)