Tournament Sequences and Meeussen Sequences. - Matthew Cook 001; Michael Kleber (Electron. J. Comb., 2000)

Self-Assembled Circuit Patterns. - Matthew Cook 001; Paul W. K. Rothemund; Erik Winfree (DNA, 2003)

Optimal t-interleaving on tori. - Anxiao Jiang; Matthew Cook 001; Jehoshua Bruck (ISIT, 2004)

Universality in Elementary Cellular Automata. - Matthew Cook 001 (Complex Syst., 2004)

A Geometric Theorem for Network Design. - Massimo Franceschetti; Matthew Cook 001; Jehoshua Bruck (IEEE Trans. Computers, 2004)

Optimal Interleaving on Tori. - Anxiao Jiang; Matthew Cook 001; Jehoshua Bruck (SIAM J. Discret. Math., 2006)

A Concrete View of Rule 110 Computation - Matthew Cook 001 (CSP, 2008)

Combining self-healing and proofreading in self-assembly. - David Soloveichik; Matthew Cook 001; Erik Winfree (Nat. Comput., 2008)

Computation with finite stochastic chemical reaction networks. - David Soloveichik; Matthew Cook 001; Erik Winfree; Jehoshua Bruck (Nat. Comput., 2008)

Programmability of Chemical Reaction Networks. - Matthew Cook 001; David Soloveichik; Erik Winfree; Jehoshua Bruck (Algorithmic Bioprocesses, 2009)

An embedded AER dynamic vision sensor for low-latency pole balancing. - Jörg Conradt; Raphael Berner; Matthew Cook 001; Tobi Delbruck (ICCV Workshops, 2009)

A Pencil Balancing Robot using a Pair of AER Dynamic Vision Sensors. - Jörg Conradt; Matthew Cook 001; Raphael Berner; Patrick Lichtsteiner; Rodney J. Douglas; Tobi Delbruck (ISCAS, 2009)

Live Demonstration: A Pencil Balancing Robot using a Pair of AER Dynamic Vision Sensors. - Jörg Conradt; Matthew Cook 001; Raphael Berner; Patrick Lichtsteiner; Rodney J. Douglas; Tobi Delbruck (ISCAS, 2009)

Unsupervised Learning of Relations. - Matthew Cook 001; Florian Jug; Christoph Krautz; Angelika Steger (ICANN (1), 2010)

Multifactor Expectation Maximization for Factor Graphs. - Jason T. Rolfe; Matthew Cook 001 (ICANN (3), 2010)

Live demonstration: State-dependent sensory processing in networks of VLSI spiking neurons. - Emre Neftci; Elisabetta Chicca; Matthew Cook 001; Giacomo Indiveri; Rodney J. Douglas (ISCAS, 2010)

State-dependent sensory processing in networks of VLSI spiking neurons. - Emre Neftci; Elisabetta Chicca; Matthew Cook 001; Giacomo Indiveri; Rodney J. Douglas (ISCAS, 2010)

Neuronal Projections Can Be Sharpened by a Biologically Plausible Learning Mechanism. - Matthew Cook 001; Florian Jug; Christoph Krautz (ICANN (1), 2011)

Interacting maps for fast visual interpretation. - Matthew Cook 001; Luca Gugelmann; Florian Jug; Christoph Krautz; Angelika Steger (IJCNN, 2011)

Temperature 1 Self-Assembly: Deterministic Assembly in 3D and Probabilistic Assembly in 2D. - Matthew Cook 001; Yunhui Fu; Robert T. Schweller (SODA, 2011)

Multi-Hypothesis CRF-Segmentation of Neural Tissue in Anisotropic EM Volumes - Jan Funke; Björn Andres; Fred A. Hamprecht; Albert Cardona; Matthew Cook 001 (CoRR, 2011)

An Instruction Language for Self-Construction in the Context of Neural Networks. - Frederic Zubler; Andreas Hauri; Sabina S. Pfister; Adrian M. Whatley; Matthew Cook 001; Rodney J. Douglas (Frontiers Comput. Neurosci., 2011)

Efficient automatic 3D-reconstruction of branching neurons from EM data. - Jan Funke; Björn Andres; Fred A. Hamprecht; Albert Cardona; Matthew Cook 001 (CVPR, 2012)

Function approximation with uncertainty propagation in a VLSI spiking neural network. - Dane S. Corneil; Daniel Sonnleithner; Emre Neftci; Elisabetta Chicca; Matthew Cook 001; Giacomo Indiveri; Rodney J. Douglas (IJCNN, 2012)

Recurrent competitive networks can learn locally excitatory topologies. - Florian Jug; Matthew Cook 001; Angelika Steger (IJCNN, 2012)

Real-time inference in a VLSI spiking neural network. - Dane S. Corneil; Daniel Sonnleithner; Emre Neftci; Elisabetta Chicca; Matthew Cook 001; Giacomo Indiveri; Rodney J. Douglas (ISCAS, 2012)

Efficient implementation of STDP rules on SpiNNaker neuromorphic hardware. - Peter U. Diehl; Matthew Cook 001 (IJCNN, 2014)

Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. - Jan Funke; Julien N. P. Martel; Stephan Gerhard; Björn Andres; Dan C. Ciresan; Alessandro Giusti; Luca Maria Gambardella; Jürgen Schmidhuber; Hanspeter Pfister; Albert Cardona; Matthew Cook 001 (MICCAI (1), 2014)

Anatomical Constraints on Lateral Competition in Columnar Cortical Architectures. - Dylan R. Muir; Matthew Cook 001 (Neural Comput., 2014)

Pixel interlacing to trade off the resolution of a cellular processor array against more registers. - Julien N. P. Martel; Miguel Chau; Matthew Cook 001; Piotr Dudek (ECCTD, 2015)

Fast-classifying, high-accuracy spiking deep networks through weight and threshold balancing. - Peter U. Diehl; Daniel Neil; Jonathan Binas; Matthew Cook 001; Shih-Chii Liu; Michael Pfeiffer 001 (IJCNN, 2015)

Toward joint approximate inference of visual quantities on cellular processor arrays. - Julien N. P. Martel; Miguel Chau; Piotr Dudek; Matthew Cook 001 (ISCAS, 2015)

A Tolerant Edit Distance for Evaluation and Training of Electron Microscopy Reconstruction Algorithms. - Jan Funke; Jonas Klein; Albert Cardona; Matthew Cook 001 (CoRR, 2015)

Unsupervised learning of digit recognition using spike-timing-dependent plasticity. - Peter U. Diehl; Matthew Cook 001 (Frontiers Comput. Neurosci., 2015)

Tracking of microtubules in anisotropic volumes of neural tissue. - Julia M. Buhmann; Stephan Gerhard; Matthew Cook 001; Jan Funke (ISBI, 2016)

Structured learning of assignment models for neuron reconstruction to minimize topological errors. - Jan Funke; Jonas Klein; Francesc Moreno-Noguer; Albert Cardona; Matthew Cook 001 (ISBI, 2016)

Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems. - Fabian Tschopp; Julien N. P. Martel; Srinivas C. Turaga; Matthew Cook 001; Jan Funke (ISBI, 2016)

Learning and Inferring Relations in Cortical Networks. - Peter U. Diehl; Matthew Cook 001 (CoRR, 2016)

Structural Plasticity Denoises Responses and Improves Learning Speed. - Robin Spiess; Richard George 001; Matthew Cook 001; Peter U. Diehl (Frontiers Comput. Neurosci., 2016)

Optimised information gathering in smartphone users. - Arko Ghosh; Jean-Pascal Pfister; Matthew Cook 001 (CoRR, 2017)

A wake-sleep algorithm for recurrent, spiking neural networks. - Johannes Thiele; Peter U. Diehl; Matthew Cook 001 (CoRR, 2017)

A cellular automaton for blocking queen games. - Matthew Cook 001; Urban Larsson; Turlough Neary (Nat. Comput., 2017)

Synaptic Partner Prediction from Point Annotations in Insect Brains. - Julia M. Buhmann; Renate Krause; Rodrigo Ceballos Lentini; Nils Eckstein; Matthew Cook 001; Srinivas C. Turaga; Jan Funke (MICCAI (2), 2018)

Generalized Tag Systems. - Turlough Neary; Matthew Cook 001 (RP, 2018)

Factorized Computation: What the Neocortex Can Tell Us About the Future of Computing. - Peter U. Diehl; Julien N. P. Martel; Jakob Buhmann; Matthew Cook 001 (Frontiers Comput. Neurosci., 2018)

Average-Case Completeness in Tag Systems. - Matthew Cook 001; Turlough Neary (STACS, 2019)

Preface. - Matthew Cook 001; Turlough Neary (Nat. Comput., 2019)

Microtubule Tracking in Electron Microscopy Volumes. - Nils Eckstein; Julia M. Buhmann; Matthew Cook 001; Jan Funke (MICCAI (5), 2020)

Estimation of Z-Thickness and XY-Anisotropy of Electron Microscopy Images using Gaussian Processes. - Thanuja D. Ambegoda; Julien N. P. Martel; Jozef Adamcik; Matthew Cook 001; Richard H. R. Hahnloser (CoRR, 2020)

Efficient 2D neuron boundary segmentation with local topological constraints. - Thanuja D. Ambegoda; Matthew Cook 001 (CoRR, 2020)

Operative dimensions in unconstrained connectivity of recurrent neural networks. - Renate Krause; Matthew Cook 001; Sepp Kollmorgen; Valerio Mante; Giacomo Indiveri (NeurIPS, 2022)

Distribution Re-weighting and Voting Paradoxes. - Bijan Mazaheri; Siddharth Jain; Matthew Cook 001; Jehoshua Bruck (CoRR, 2023)

Spiking Seizure Classification Dataset. - Jim Bartels; Olympia Gallou; Hiroyuki Ito; Matthew Cook 001; Johannes Sarnthein; Giacomo Indiveri; Saptarshi Ghosh 003 (Zenodo, 2024)

Omitted Labels Induce Nontransitive Paradoxes in Causality. - Bijan Mazaheri; Siddharth Jain; Matthew Cook 001; Jehoshua Bruck (CLeaR, 2025)