MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization. - Carol L. Ecale Zhou; Marisa Lam; Jason Smith 002; Adam T. Zemla; Matthew D. Dyer; Thomas A. Kuczmarski; Elizabeth A. Vitalis; Thomas R. Slezak (BMC Bioinform., 2006)

Computational prediction of host-pathogen protein-protein interactions. - Matthew D. Dyer; T. M. Murali 001; Bruno W. S. Sobral (ISMB/ECCB (Supplement of Bioinformatics), 2007)

MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. - Carol L. Ecale Zhou; Jason Smith 002; Marisa Lam; Adam T. Zemla; Matthew D. Dyer; Tom Slezak (Nucleic Acids Res., 2007)

PIG - the pathogen interaction gateway. - Tim Driscoll; Matthew D. Dyer; T. M. Murali 001; Bruno W. S. Sobral (Nucleic Acids Res., 2009)

Network-Based Prediction and Analysis of HIV Dependency Factors. - T. M. Murali 001; Matthew D. Dyer; David Badger; Brett M. Tyler; Michael G. Katze (PLoS Comput. Biol., 2011)