Overhauling a Failed Project Using Out of the Box Scrum. - Matthew D. Edwards (AGILE, 2008)

High-resolution genetic mapping with pooled sequencing. - Matthew D. Edwards; David K. Gifford (BMC Bioinform., 2012)

Universal Count Correction for High-Throughput Sequencing. - Tatsunori B. Hashimoto; Matthew D. Edwards; David K. Gifford (PLoS Comput. Biol., 2014)

An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding. - Shaun Mahony; Matthew D. Edwards; Esteban O. Mazzoni; Richard I. Sherwood; Akshay Kakumanu; Carolyn A. Morrison; Hynek Wichterle; David K. Gifford (PLoS Comput. Biol., 2014)

Convolutional neural network architectures for predicting DNA-protein binding. - Haoyang Zeng; Matthew D. Edwards; Ge Liu; David K. Gifford (Bioinform., 2016)

Information-sharing models for computational genetics. - Matthew Douglas Edwards (2016)