Adaptive Simulation: Dynamic Data Driven Application in Geophysical Mass Flows. - Matthew D. Jones; E. Bruce Pitman; Abani K. Patra; Keith Dalbey; Andrew C. Bauer (IPDPS, 2005)

Large-Scale QM/MM Calculations of Electronic Excitations in Yellow Protein: Toward Petascale Level of Protein Calculations. - Marek Freindorf; Matthew D. Jones; Yihan Shao; Jing Kong; Thomas R. Furlani (BIBE, 2007)

Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations. - Jeffrey A. Delmerico; Nathanial A. Byrnes; Andrew E. Bruno; Matthew D. Jones; Steven M. Gallo; Vipin Chaudhary (HiPC, 2009)

Visualizing the wake of aquatic swimmers. - Iman Borazjani; Mohsen Daghooghi; Nathaniel Barlow; Martins Innus; Adrian Levesque; Alisa Neeman; Matthew D. Jones; Cynthia D. Cornelius (SC Companion, 2011)

Performance metrics and auditing framework for high performance computer systems. - Thomas R. Furlani; Matthew D. Jones; Steven M. Gallo; Andrew E. Bruno; Charng-Da Lu; Amin Ghadersohi; Ryan J. Gentner; Abani K. Patra; Robert L. DeLeon; Gregor von Laszewski; Lizhe Wang 001; Ann Zimmerman (TG, 2011)

Automatically mining program build information via signature matching. - Charng-Da Lu; Matthew D. Jones; Thomas R. Furlani (TG, 2011)

Polynomial Chaos Quadrature-based Minimum Variance Approach for Source Parameters Estimation. - Reza Madankan; Puneet Singla; Abani K. Patra; Marcus Bursik; Jon Dehn 002; Matthew D. Jones; Michael Pavolonis; E. Bruce Pitman; Tarunraj Singh; Peter W. Webley (ICCS, 2012)

A DDDAS Framework for Volcanic Ash Propagation and Hazard Analysis. - Abani K. Patra; Marcus Bursik; Jon Dehn 002; Matthew D. Jones; Michael Pavolonis; E. Bruce Pitman; Tarunraj Singh; Puneet Singla; Peter W. Webley (ICCS, 2012)

Implementing green technologies and practices in a high performance computing center. - Jay U. Patel; Salvatore J. Guercio; Andrew E. Bruno; Matthew D. Jones; Thomas R. Furlani (IGCC, 2013)

Challenges in Developing DDDAS Based Methodology for Volcanic Ash Hazard Analysis - Effect of Numerical Weather Prediction Variability and Parameter Estimation. - Abani K. Patra; Marcus Bursik; Jon Dehn 002; Matthew D. Jones; Reza Madankan; Donald J. Morton; Michael Pavolonis; E. Bruce Pitman; Solene Pouget; Tarunraj Singh; Puneet Singla; E. R. Stefanescu; et al. (ICCS, 2013)

Enabling comprehensive data-driven system management for large computational facilities. - James C. Browne; Robert L. DeLeon; Charng-Da Lu; Matthew D. Jones; Steven M. Gallo; Amin Ghadersohi; Abani K. Patra; William L. Barth; John L. Hammond; Thomas R. Furlani; Robert T. McLay (SC, 2013)

Using XDMoD to facilitate XSEDE operations, planning and analysis. - Thomas R. Furlani; Barry I. Schneider; Matthew D. Jones; John Towns; David L. Hart; Steven M. Gallo; Robert L. DeLeon; Charng-Da Lu; Amin Ghadersohi; Ryan J. Gentner; Abani K. Patra; Gregor von Laszewski; et al. (XSEDE, 2013)

Comprehensive job level resource usage measurement and analysis for XSEDE HPC systems. - Charng-Da Lu; James C. Browne; Robert L. DeLeon; John L. Hammond; William L. Barth; Thomas R. Furlani; Steven M. Gallo; Matthew D. Jones; Abani K. Patra (XSEDE, 2013)

Performance metrics and auditing framework using application kernels for high-performance computer systems. - Thomas R. Furlani; Matthew D. Jones; Steven M. Gallo; Andrew E. Bruno; Charng-Da Lu; Amin Ghadersohi; Ryan J. Gentner; Abani K. Patra; Robert L. DeLeon; Gregor von Laszewski; Fugang Wang; Ann Zimmerman (Concurr. Comput. Pract. Exp., 2013)

Fast Construction of Surrogates for UQ Central to DDDAS- Application to Volcanic Ash Transport. - E. R. Stefanescu; Abani K. Patra; Marcus Bursik; Matthew D. Jones; Reza Madankan; E. Bruce Pitman; Solene Pouget; Tarunraj Singh; Puneet Singla; Peter W. Webley; Don Morton (ICCS, 2014)

Development of a computational and data-enabled science and engineering Ph.D. program. - Paul T. Bauman; Varun Chandola; Abani K. Patra; Matthew D. Jones (EduHPC@SC, 2014)

Comprehensive resource use monitoring for HPC systems with TACC stats. - R. Todd Evans; William L. Barth; James C. Browne; Robert L. DeLeon; Thomas R. Furlani; Steven M. Gallo; Matthew D. Jones; Abani K. Patra (HUST@SC, 2014)

An Analysis of Node Sharing on HPC Clusters using XDMoD/TACC_Stats. - Joseph P. White; Robert L. DeLeon; Thomas R. Furlani; Steven M. Gallo; Matthew D. Jones; Amin Ghadersohi; Cynthia D. Cornelius; Abani K. Patra; James C. Browne; William L. Barth; John L. Hammond (XSEDE, 2014)

Comprehensive, open-source resource usage measurement and analysis for HPC systems. - James C. Browne; Robert L. DeLeon; Abani K. Patra; William L. Barth; John L. Hammond; Matthew D. Jones; Thomas R. Furlani; Barry I. Schneider; Steven M. Gallo; Amin Ghadersohi; Ryan J. Gentner; Jeffrey T. Palmer; et al. (Concurr. Comput. Pract. Exp., 2014)

Computation of probabilistic hazard maps and source parameter estimation for volcanic ash transport and dispersion. - Reza Madankan; Solene Pouget; Puneet Singla; Marcus Bursik; Jon Dehn 002; Matthew D. Jones; Abani K. Patra; Michael Pavolonis; E. Bruce Pitman; Tarunraj Singh; Peter W. Webley (J. Comput. Phys., 2014)

Analysis of XDMoD/SUPReMM Data Using Machine Learning Techniques. - Steven M. Gallo; Joseph P. White; Robert L. DeLeon; Thomas R. Furlani; Helen Ngo; Abani K. Patra; Matthew D. Jones; Jeffrey T. Palmer; Nikolay Simakov; Jeanette M. Sperhac; Martins Innus; Thomas Yearke; et al. (CLUSTER, 2015)

Forecasting Volcanic Plume Hazards With Fast UQ. - E. Ramona Stefanescu; Abani K. Patra; Marcus Bursik; E. Bruce Pitman; Peter W. Webley; Matthew D. Jones (ICCS, 2015)

TAS view of XSEDE users and usage. - Robert L. DeLeon; Thomas R. Furlani; Steven M. Gallo; Joseph P. White; Matthew D. Jones; Abani K. Patra; Martins Innus; Thomas Yearke; Jeffrey T. Palmer; Jeanette M. Sperhac; Ryan Rathsam; Nikolay Simakov; et al. (XSEDE, 2015)

Application kernels: HPC resources performance monitoring and variance analysis. - Nikolay A. Simakov; Joseph P. White; Robert L. DeLeon; Amin Ghadersohi; Thomas R. Furlani; Matthew D. Jones; Steven M. Gallo; Abani K. Patra (Concurr. Comput. Pract. Exp., 2015)

Open XDMoD: A Tool for the Comprehensive Management of High-Performance Computing Resources. - Jeffrey T. Palmer; Steven M. Gallo; Thomas R. Furlani; Matthew D. Jones; Robert L. DeLeon; Joseph P. White; Nikolay Simakov; Abani K. Patra; Jeanette M. Sperhac; Thomas Yearke; Ryan Rathsam; Martins Innus; et al. (Comput. Sci. Eng., 2015)

A Quantitative Analysis of Node Sharing on HPC Clusters Using XDMoD Application Kernels. - Nikolay A. Simakov; Robert L. DeLeon; Joseph P. White; Thomas R. Furlani; Martins Innus; Steven M. Gallo; Matthew D. Jones; Abani K. Patra; Benjamin D. Plessinger; Jeanette M. Sperhac; Thomas Yearke; Ryan Rathsam; et al. (XSEDE, 2016)

Data Management and Volcano Plume Simulation with Parallel SPH Method and Dynamic Halo Domains. - Zhixuan Cao; Abani K. Patra; Matthew D. Jones (ICCS, 2017)

A Slurm Simulator: Implementation and Parametric Analysis. - Nikolay A. Simakov; Martins D. Innus; Matthew D. Jones; Robert L. DeLeon; Joseph P. White; Steven M. Gallo; Abani K. Patra; Thomas R. Furlani (PMBS@SC, 2017)

Challenges of Workload Analysis on Large HPC Systems: A Case Study on NCSA Blue Waters. - Joseph P. White; Martins Innus; Matthew D. Jones; Robert L. DeLeon; Nikolay Simakov; Jeffrey T. Palmer; Steven M. Gallo; Thomas R. Furlani; Michael T. Showerman; Robert Brunner; Andry Kot; Gregory H. Bauer; et al. (PEARC, 2017)

Workload Analysis of Blue Waters. - Matthew D. Jones; Joseph P. White; Martins Innus; Robert L. DeLeon; Nikolay Simakov; Jeffrey T. Palmer; Steven M. Gallo; Thomas R. Furlani; Michael T. Showerman; Robert Brunner; Andry Kot; Gregory H. Bauer; et al. (CoRR, 2017)

Federating XDMoD to Monitor Affiliated Computing Resources. - Jeanette M. Sperhac; Benjamin D. Plessinger; Jeffrey T. Palmer; Rudra Chakraborty; Gregary Dean; Martins Innus; Ryan Rathsam; Nikolay Simakov; Joseph P. White; Thomas R. Furlani; Steven M. Gallo; Robert L. DeLeon; et al. (CLUSTER, 2018)

Maximum Area Axis-Aligned Square Packings. - Hugo A. Akitaya; Matthew D. Jones; David Stalfa; Csaba D. Tóth (MFCS, 2018)

Slurm Simulator: Improving Slurm Scheduler Performance on Large HPC systems by Utilization of Multiple Controllers and Node Sharing. - Nikolay A. Simakov; Robert L. DeLeon; Martins D. Innus; Matthew D. Jones; Joseph P. White; Steven M. Gallo; Abani K. Patra; Thomas R. Furlani (PEARC, 2018)

Automatic Characterization of HPC Job Parallel Filesystem I/O Patterns. - Joseph P. White; Alexander D. Kofke; Robert L. DeLeon; Martins Innus; Matthew D. Jones; Thomas R. Furlani (PEARC, 2018)

A Workload Analysis of NSF's Innovative HPC Resources Using XDMoD. - Nikolay A. Simakov; Joseph P. White; Robert L. DeLeon; Steven M. Gallo; Matthew D. Jones; Jeffrey T. Palmer; Benjamin D. Plessinger; Thomas R. Furlani (CoRR, 2018)

Effect of Meltdown and Spectre Patches on the Performance of HPC Applications. - Nikolay A. Simakov; Martins D. Innus; Matthew D. Jones; Joseph P. White; Steven M. Gallo; Robert L. DeLeon; Thomas R. Furlani (CoRR, 2018)

Modernizing Titan2D, a Parallel AMR Geophysical Flow Code to Support Multiple Rheologies and Extendability. - Nikolay A. Simakov; Renette L. Jones-Ivey; Ali Akhavan-Safaei; Hossein Aghakhani; Matthew D. Jones; Abani K. Patra (ISC Workshops, 2019)

Reconfiguration of Connected Graph Partitions. - Hugo A. Akitaya; Matthew D. Jones; Matias Korman; Christopher Meierfrankenfeld; Michael J. Munje; Diane L. Souvaine; Michael Thramann; Csaba D. Tóth (CoRR, 2019)

Managing computational gateway resources with XDMoD. - Jeanette M. Sperhac; Robert L. DeLeon; Thomas R. Furlani; Steven M. Gallo; Martins Innus; Matthew D. Jones; Jeffrey T. Palmer; Abani K. Patra; Benjamin D. Plessinger; Ryan Rathsam; Nikolay Simakov; Joseph P. White; et al. (Future Gener. Comput. Syst., 2019)

Towards Performant Workflows, Monitoring and Measuring. - Jeanette M. Sperhac; Robert L. DeLeon; Joseph P. White; Matthew D. Jones; Andrew E. Bruno; Renette L. Jones-Ivey; Thomas R. Furlani; Jonathan E. Bard; Vipin Chaudhary (ICCCN, 2020)

Grendel: Bare Metal Provisioning System for High Performance Computing. - Andrew E. Bruno; Salvatore J. Guercio; Doris Sajdak; Tony Kew; Matthew D. Jones (PEARC, 2020)

Monitoring and Analysis of Power Consumption on HPC Clusters using XDMoD. - Joseph P. White; Martins Innus; Robert L. DeLeon; Matthew D. Jones; Thomas R. Furlani (PEARC, 2020)

The reach of axis-aligned squares in the plane. - Hugo A. Akitaya; Matthew D. Jones; David Stalfa; Csaba D. Tóth (Discret. Optim., 2020)

A64FX performance: experience on Ookami. - Md Abdullah Shahneous Bari; Barbara M. Chapman; Anthony Curtis; Robert J. Harrison; Eva Siegmann; Nikolay A. Simakov; Matthew D. Jones (CLUSTER, 2021)

Performance Optimization of the Open XDMoD Datawarehouse. - Gregary Dean; Joshua Moraes; Joseph P. White; Robert L. DeLeon; Matthew D. Jones; Thomas R. Furlani (PEARC, 2022)

Are we ready for broader adoption of ARM in the HPC community: Performance and Energy Efficiency Analysis of Benchmarks and Applications Executed on High-End ARM Systems. - Nikolay A. Simakov; Robert L. DeLeon; Joseph P. White; Matthew D. Jones; Thomas R. Furlani; Eva Siegmann; Robert J. Harrison (HPC Asia Workshops, 2023)

Reconfiguration of connected graph partitions. - Hugo A. Akitaya; Matthew D. Jones; Matias Korman; Oliver Korten; Christopher Meierfrankenfeld; Michael J. Munje; Diane L. Souvaine; Michael Thramann; Csaba D. Tóth (J. Graph Theory, 2023)

First Impressions of the NVIDIA Grace CPU Superchip and NVIDIA Grace Hopper Superchip for Scientific Workloads. - Nikolay A. Simakov; Matthew D. Jones; Thomas R. Furlani; Eva Siegmann; Robert J. Harrison (HPC Asia Workshops, 2024)

Benchmarking and Continuous Performance Monitoring of Ookami, an ARM Fujitsu A64FX Testbed Cluster. - Nikolay A. Simakov; Joseph P. White; Matthew D. Jones; Eva Siegmann; Daniel G. Wood; Firat Coskun; Robert J. Harrison (SC Workshops, 2024)

Overview of ACCESS allocated cyberinfrastructure usage. - Joseph Patrick White; Aaron Weeden; Robert L. DeLeon; Thomas R. Furlani; Matthew D. Jones (PEARC, 2024)

Standardizing Intelligence: Aligning Generative AI for Regulatory and Operational Compliance. - Joseph Marvin Imperial; Matthew D. Jones; Harish Tayyar Madabushi (CoRR, 2025)