Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase. - Carmen Pin; Matthew D. Rolfe; Marina Muñoz-Cuevas; Jay C. D. Hinton; Michael W. Peck; Nicholas J. Walton; József Baranyi (BMC Syst. Biol., 2009)

TFInfer: a tool for probabilistic inference of transcription factor activities. - Hafiz Muhammad Shahzad Asif; Matthew D. Rolfe; Jeffrey Green; Neil D. Lawrence; Magnus Rattray; Guido Sanguinetti (Bioinform., 2010)

Agent-Based Modeling of Oxygen-Responsive Transcription Factors in Escherichia coli. - Hao Bai; Matthew D. Rolfe; Wenjing Jia; Simon Coakley; Robert K. Poole; Jeffrey Green; Mike Holcombe (PLoS Comput. Biol., 2014)