The Focal Adhesion Analysis Server: a web tool for analyzing focal adhesion dynamics. - Matthew E. Berginski; Shawn M. Gomez (F1000Research, 2013)

Application of Bioimage Informatics to Quantification of Focal Adhesions and Invadopodia. - Matthew E. Berginski (2013)

The Dark Kinase Knowledgebase: an online compendium of knowledge and experimental results of understudied kinases. - Matthew E. Berginski; Nienke Moret; Changchang Liu; Dennis Goldfarb; Peter K. Sorger; Shawn M. Gomez (Nucleic Acids Res., 2021)

Kinome inhibition states and multiomics data enable prediction of cell viability in diverse cancer types. - Matthew E. Berginski; Chinmaya U. Joisa; Brian T. Golitz; Shawn M. Gomez (PLoS Comput. Biol., 2023)