Informatics and Data Mining Tools and Strategies for the Human Connectome Project. - Daniel S. Marcus; John W. Harwell; Timothy R. Olsen; Michael R. Hodge; Matthew F. Glasser; Fred W. Prior; Mark Jenkinson; Timothy O. Laumann; Sandra W. Curtiss; David C. Van Essen (Frontiers Neuroinformatics, 2011)

The Human Connectome Project: A data acquisition perspective. - David C. Van Essen; Kâmil Ugurbil; Edward J. Auerbach; Deanna M. Barch; T. E. J. Behrens; R. Bucholz; Acer Chang; Liyong Chen; Maurizio Corbetta; Sandra W. Curtiss; Stefania Della Penna; David A. Feinberg; et al. (NeuroImage, 2012)

Quantitative assessment of a framework for creating anatomical brain networks via global tractography. - Longchuan Li; James K. Rilling; Todd M. Preuss; Matthew F. Glasser; Frederick W. Damen; Xiaoping Hu 001 (NeuroImage, 2012)

Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation. - Emma C. Robinson; Saâd Jbabdi; Jesper L. R. Andersson; Stephen M. Smith 001; Matthew F. Glasser; David C. Van Essen; Gregory C. Burgess; Michael P. Harms; Deanna M. Barch; Mark Jenkinson (IPMI, 2013)

Function in the human connectome: Task-fMRI and individual differences in behavior. - Deanna M. Barch; Gregory C. Burgess; Michael P. Harms; Steven E. Petersen; Bradley L. Schlaggar; Maurizio Corbetta; Matthew F. Glasser; Sandra W. Curtiss; Sachin Dixit; Cindy Feldt; Dan Nolan; Edward Bryant; et al. (NeuroImage, 2013)

Spatially constrained hierarchical parcellation of the brain with resting-state fMRI. - Thomas Blumensath; Saâd Jbabdi; Matthew F. Glasser; David C. Van Essen; Kâmil Ugurbil; Timothy Edward John Behrens; Stephen M. Smith 001 (NeuroImage, 2013)

The minimal preprocessing pipelines for the Human Connectome Project. - Matthew F. Glasser; Stamatios N. Sotiropoulos; J. Anthony Wilson; Timothy S. Coalson; Bruce Fischl; Jesper L. R. Andersson; Junqian Xu; Saâd Jbabdi; Matthew A. Webster; Jonathan R. Polimeni; David C. Van Essen; Mark Jenkinson (NeuroImage, 2013)

Mapping putative hubs in human, chimpanzee and rhesus macaque connectomes via diffusion tractography. - Longchuan Li; Xiaoping Hu 001; Todd M. Preuss; Matthew F. Glasser; Frederick W. Damen; Yuxuan Qiu; James K. Rilling (NeuroImage, 2013)

Human Connectome Project informatics: Quality control, database services, and data visualization. - Daniel S. Marcus; Michael P. Harms; Abraham Z. Snyder; Mark Jenkinson; J. Anthony Wilson; Matthew F. Glasser; Deanna M. Barch; Kevin A. Archie; Gregory C. Burgess; Mohana Ramaratnam; Michael R. Hodge; William Horton; et al. (NeuroImage, 2013)

Resting-state fMRI in the Human Connectome Project. - Stephen M. Smith 001; Christian F. Beckmann; Jesper L. R. Andersson; Edward J. Auerbach; Janine D. Bijsterbosch; Gwenaëlle Douaud; Eugene P. Duff; David A. Feinberg; Ludovica Griffanti; Michael P. Harms; Michael Kelly; Timothy O. Laumann; et al. (NeuroImage, 2013)

Advances in diffusion MRI acquisition and processing in the Human Connectome Project. - Stamatios N. Sotiropoulos; Saâd Jbabdi; Junqian Xu; Jesper L. R. Andersson; Steen Moeller; Edward J. Auerbach; Matthew F. Glasser; Moisés Hernández; Guillermo Sapiro; Mark Jenkinson; David A. Feinberg; Essa Yacoub; et al. (NeuroImage, 2013)

Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. - Kâmil Ugurbil; Junqian Xu; Edward J. Auerbach; Steen Moeller; An T. Vu; Julio Martin Duarte-Carvajalino; Christophe Lenglet; Xiaoping Wu; Sebastian Schmitter; Pierre-François van de Moortele; John P. Strupp; Guillermo Sapiro; et al. (NeuroImage, 2013)

Correspondences between retinotopic areas and myelin maps in human visual cortex. - Rouhollah O. Abdollahi; Hauke Kolster; Matthew F. Glasser; Emma C. Robinson; Timothy S. Coalson; Donna L. Dierker; Mark Jenkinson; David C. Van Essen; Guy A. Orban (NeuroImage, 2014)

In vivo architectonics: A cortico-centric perspective. - David C. Van Essen; Matthew F. Glasser (NeuroImage, 2014)

Trends and properties of human cerebral cortex: Correlations with cortical myelin content. - Matthew F. Glasser; Manu S. Goyal; Todd M. Preuss; Marcus E. Raichle; David C. Van Essen (NeuroImage, 2014)

Automatic denoising of functional MRI data: Combining independent component analysis and hierarchical fusion of classifiers. - Gholamreza Salimi Khorshidi; Gwenaëlle Douaud; Christian F. Beckmann; Matthew F. Glasser; Ludovica Griffanti; Stephen M. Smith 001 (NeuroImage, 2014)

MSM: A new flexible framework for Multimodal Surface Matching. - Emma C. Robinson; Saâd Jbabdi; Matthew F. Glasser; Jesper L. R. Andersson; Gregory C. Burgess; Michael P. Harms; Stephen M. Smith 001; David C. Van Essen; Mark Jenkinson (NeuroImage, 2014)

Early postnatal myelin content estimate of white matter via T1w/T2w ratio. - Kevin Lee; Marie Cherel; François Budin; John H. Gilmore; Kirsten Zaldarriaga Consing; Jerod Rasmussen; Pathik D. Wadhwa; Sonja Entringer; Matthew F. Glasser; David C. Van Essen; Claudia Buss; Martin Styner (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2015)

Large-scale Probabilistic Functional Modes from resting state fMRI. - Samuel J. Harrison; Mark W. Woolrich; Emma C. Robinson; Matthew F. Glasser; Christian F. Beckmann; Mark Jenkinson; Stephen M. Smith 001 (NeuroImage, 2015)

A multi-modal parcellation of human cerebral cortex. - Matthew F. Glasser; Timothy S. Coalson; Emma C. Robinson; Carl D. Hacker; John W. Harwell; Essa Yacoub; Kâmil Ugurbil; Jesper L. R. Andersson; Christian F. Beckmann; Mark Jenkinson; Stephen M. Smith 001; David C. Van Essen (Nat., 2016)

ConnectomeDB - Sharing human brain connectivity data. - Michael R. Hodge; William Horton; Timothy Brown; Rick Herrick; Timothy R. Olsen; Michael Hileman; Michael McKay; Kevin A. Archie; Eileen Cler; Michael P. Harms; Gregory C. Burgess; Matthew F. Glasser; et al. (NeuroImage, 2016)

The Brain Analysis Library of Spatial maps and Atlases (BALSA) database. - David C. Van Essen; John Smith; Matthew F. Glasser; Jennifer Stine Elam; Chad J. Donahue; Donna L. Dierker; Erin Reid; Timothy S. Coalson; John W. Harwell (NeuroImage, 2017)

Hand classification of fMRI ICA noise components. - Ludovica Griffanti; Gwenaëlle Douaud; Janine D. Bijsterbosch; Stefania Evangelisti; Fidel Alfaro-Almagro; Matthew F. Glasser; Eugene P. Duff; Sean P. Fitzgibbon; Robert Westphal; Davide Carone; Christian F. Beckmann; Stephen M. Smith 001 (NeuroImage, 2017)

Tradeoffs in pushing the spatial resolution of fMRI for the 7T Human Connectome Project. - An T. Vu; Keith Jamison; Matthew F. Glasser; Stephen M. Smith 001; Timothy S. Coalson; Steen Moeller; Edward J. Auerbach; Kâmil Ugurbil; Essa Yacoub (NeuroImage, 2017)

Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project. - Jelena Bozek; Antonios Makropoulos; Andreas Schuh; Sean P. Fitzgibbon; Robert Wright; Matthew F. Glasser; Timothy S. Coalson; Jonathan O'Muircheartaigh; Jana Hutter; Anthony N. Price; Lucilio Cordero-Grande; Rui Pedro A. G. Teixeira; et al. (NeuroImage, 2018)

Neurite imaging reveals microstructural variations in human cerebral cortical gray matter. - Hikaru Fukutomi; Matthew F. Glasser; Hui Zhang 005; Joonas A. A. Autio; Timothy S. Coalson; Tomohisa Okada; Kaori Togashi; David C. Van Essen; Takuya Hayashi 002 (NeuroImage, 2018)

Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data. - Matthew F. Glasser; Timothy S. Coalson; Janine D. Bijsterbosch; Samuel J. Harrison; Michael P. Harms; Alan Anticevic; David C. Van Essen; Stephen M. Smith 001 (NeuroImage, 2018)

Multimodal surface matching with higher-order smoothness constraints. - Emma C. Robinson; Kara Garcia; Matthew F. Glasser; Zhengdao Chen; Timothy S. Coalson; Antonios Makropoulos; Jelena Bozek; Robert Wright; Andreas Schuh; Matthew A. Webster; Jana Hutter; Anthony Price; et al. (NeuroImage, 2018)

Ciftify: A framework for surface-based analysis of legacy MR acquisitions. - Erin W. Dickie; Alan Anticevic; Dawn E. Smith; Timothy S. Coalson; Mathuvanthi Manogaran; Navona Calarco; Joseph D. Viviano; Matthew F. Glasser; David C. Van Essen; Aristotle N. Voineskos (NeuroImage, 2019)

Classification of temporal ICA components for separating global noise from fMRI data: Reply to Power. - Matthew F. Glasser; Timothy S. Coalson; Janine D. Bijsterbosch; Samuel J. Harrison; Michael P. Harms; Alan Anticevic; David C. Van Essen; Stephen M. Smith 001 (NeuroImage, 2019)

Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing. - Joonas A. A. Autio; Matthew F. Glasser; Takayuki Ose; Chad J. Donahue; Matteo Bastiani; Masahiro Ohno; Yoshihiko Kawabata; Yuta Urushibata; Katsutoshi Murata; Kantaro Nishigori; Masataka Yamaguchi; Yuki Hori; et al. (NeuroImage, 2020)

Non-negative data-driven mapping of structural connections with application to the neonatal brain. - Elinor Thompson; Ali Reza Mohammadi-Nejad; Emma C. Robinson; Jesper L. R. Andersson; Saâd Jbabdi; Matthew F. Glasser; Matteo Bastiani; Stamatios N. Sotiropoulos (NeuroImage, 2020)

Geometric Deep Learning of the Human Connectome Project Multimodal Cortical Parcellation. - Logan Z. J. Williams; Abdulah Fawaz; Matthew F. Glasser; A. David Edwards; Emma C. Robinson (MLCN@MICCAI, 2021)

ICAM-reg: Interpretable Classification and Regression with Feature Attribution for Mapping Neurological Phenotypes in Individual Scans. - Cher Bass; Mariana da Silva; Carole H. Sudre; Logan Z. J. Williams; Petru-Daniel Tudosiu; Fidel Alfaro-Almagro; Sean P. Fitzgibbon; Matthew F. Glasser; Stephen M. Smith 001; Emma C. Robinson (CoRR, 2021)

Minimal specifications for non-human primate MRI: Challenges in standardizing and harmonizing data collection. - Joonas A. A. Autio; Qi Zhu; Xiaolian Li; Matthew F. Glasser; Caspar M. Schwiedrzik; Damien A. Fair; Jan Zimmermann; Essa Yacoub; Ravi S. Menon; David C. Van Essen; Takuya Hayashi 002; Brian E. Russ; et al. (NeuroImage, 2021)

Recent developments in representations of the connectome. - Janine D. Bijsterbosch; Sofie L. Valk; Danhong Wang; Matthew F. Glasser (NeuroImage, 2021)

Modelling white matter in gyral blades as a continuous vector field. - Michiel Cottaar; Matteo Bastiani; Nikhil Boddu; Matthew F. Glasser; Suzanne N. Haber; David C. Van Essen; Stamatios N. Sotiropoulos; Saâd Jbabdi (NeuroImage, 2021)

The Human Connectome Project: A retrospective. - Jennifer Stine Elam; Matthew F. Glasser; Michael P. Harms; Stamatios N. Sotiropoulos; Jesper L. R. Andersson; Gregory C. Burgess; Sandra W. Curtiss; Robert Oostenveld; Linda J. Larson-Prior; Jan-Mathijs Schoffelen; Michael R. Hodge; Eileen A. Cler; et al. (NeuroImage, 2021)

The nonhuman primate neuroimaging and neuroanatomy project. - Takuya Hayashi 002; Yujie Hou; Matthew F. Glasser; Joonas A. A. Autio; Kenneth Knoblauch; Miho Inoue-Murayama; Timothy S. Coalson; Essa Yacoub; Stephen M. Smith 001; Henry Kennedy 002; David C. Van Essen (NeuroImage, 2021)

Relating whole-brain functional connectivity to self-reported negative emotion in a large sample of young adults using group regularized canonical correlation analysis. - Leonardo Tozzi; Elena Tuzhilina; Matthew F. Glasser; Trevor J. Hastie; Leanne M. Williams (NeuroImage, 2021)

Comparative connectomics of the primate social brain. - Chihiro Yokoyama; Joonas A. A. Autio; Takuro Ikeda; Jérôme Sallet; Rogier B. Mars; David C. Van Essen; Matthew F. Glasser; Norihiro Sadato; Takuya Hayashi 002 (NeuroImage, 2021)

Surface Vision Transformers: Attention-Based Modelling applied to Cortical Analysis. - Simon Dahan; Abdulah Fawaz; Logan Z. J. Williams; Chunhui Yang; Timothy S. Coalson; Matthew F. Glasser; A. David Edwards; Daniel Rueckert; Emma C. Robinson (MIDL, 2022)

Surface Vision Transformers: Flexible Attention-Based Modelling of Biomedical Surfaces. - Simon Dahan; Hao Xu; Logan Z. J. Williams; Abdulah Fawaz; Chunhui Yang; Timothy S. Coalson; Michelle C. Williams; David E. Newby; A. David Edwards; Matthew F. Glasser; Alistair A. Young; Daniel Rueckert; et al. (CoRR, 2022)

Empirical transmit field bias correction of T1w/T2w myelin maps. - Matthew F. Glasser; Timothy S. Coalson; Michael P. Harms; Junqian Xu; Graham L. Baum; Joonas A. A. Autio; Edward J. Auerbach; Douglas N. Greve; Essa Yacoub; David C. Van Essen; Nicholas A. Bock; Takuya Hayashi 002 (NeuroImage, 2022)

Anatomical variability, multi-modal coordinate systems, and precision targeting in the marmoset brain. - Takayuki Ose; Joonas A. A. Autio; Masahiro Ohno; Stephen Frey; Akiko Uematsu; Akihiro Kawasaki; Chiho Takeda; Yuki Hori; Kantaro Nishigori; Tomokazu Nakako; Chihiro Yokoyama; Hidetaka Nagata; et al. (NeuroImage, 2022)

QuNex - An integrative platform for reproducible neuroimaging analytics. - Jie Lisa Ji; Jure Demsar; Clara Fonteneau; Zailyn Tamayo; Lining Pan; Aleksij Kraljic; Andraz Matkovic; Nina Purg; Markus Helmer; Shaun Warrington; Anderson M. Winkler; Valerio Zerbi; et al. (Frontiers Neuroinformatics, 2023)

ICAM-Reg: Interpretable Classification and Regression With Feature Attribution for Mapping Neurological Phenotypes in Individual Scans. - Cher Bass; Mariana da Silva; Carole H. Sudre; Logan Z. J. Williams; Helena S. Sousa; Petru-Daniel Tudosiu; Fidel Alfaro-Almagro; Sean P. Fitzgibbon; Matthew F. Glasser; Stephen M. Smith 001; Emma C. Robinson (IEEE Trans. Medical Imaging, 2023)

Cardiovascular and metabolic health is associated with functional brain connectivity in middle-aged and older adults: Results from the Human Connectome Project-Aging study. - Barnaly Rashid; Matthew F. Glasser; Thomas E. Nichols; David C. Van Essen; Meher R. Juttukonda; Nadine A. Schwab; Douglas N. Greve; Essa Yacoub; Allison E. Lovely; Melissa Terpstra; Michael P. Harms; Susan Y. Bookheimer; et al. (NeuroImage, 2023)

Identifying and reverting the adverse effects of white matter hyperintensities on cortical surface analyses. - Yuki Oi; Masakazu Hirose; Hiroki Togo; Kenji Yoshinaga; Thai Akasaka; Tomohisa Okada; Toshihiko Aso; Ryosuke Takahashi; Matthew F. Glasser; Takuya Hayashi 002; Takashi Hanakawa (NeuroImage, 2023)

From Low Field to High Value: Robust Cortical Mapping from Low-Field MRI. - Karthik Gopinath; Annabel Sorby-Adams; Jonathan Williams Ramirez; Dina Zemlyanker; Jennifer Guo; David Hunt; Christine L. Mac Donald; C. Dirk Keene; Timothy S. Coalson; Matthew F. Glasser; David C. Van Essen; Matthew S. Rosen; et al. (CoRR, 2025)