Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints. - Matthew G. Seetin; David H. Mathews (J. Comput. Chem., 2011)

TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots. - Matthew G. Seetin; David H. Mathews (Bioinform., 2012)

RNAstructure: web servers for RNA secondary structure prediction and analysis. - Stanislav Bellaousov; Jessica S. Reuter; Matthew G. Seetin; David H. Mathews (Nucleic Acids Res., 2013)