Determination of motion parameters and estimation of point correspondences in small nonrigid deformations. - Chandra Kambhamettu; Dmitry B. Goldgof; Matthew He (CVPR, 1994)

3D nonrigid motion analysis under small deformations. - Chandra Kambhamettu; Dmitry B. Goldgof; Matthew He; Pavel Laskov (Image Vis. Comput., 2003)

Using an Optimization Method to Determine the Parameters of the Accommodative System of the Eye. - Matthew He; Bai-Chuan Jiang; Yuliya Poberzhnyak (METMBS, 2004)

Using Bilinear Transformations to Estimate The Ratios of Accommodation and Vergence Responses of Binocular Vision. - Matthew He; Bai-Chuan Jiang (IEEE ICCI, 2006)

On bioinformatics and cognitive informatics: Emerging pattern, dissipative structure, and evolving cognition. - Matthew He (IEEE ICCI, 2008)

Irreplaceable Amino Acids and Reduced Alphabets in Short-Term and Directed Protein Evolution. - Miguel A. Jiménez-Montaño; Matthew He (ISBRA, 2009)

Matrix Genetics and THE Bipolar Algbera of the Genetic Code. - Matthew He; Sergei V. Petoukhov (BIOCOMP, 2010)

Guest Editorial. - Robin G. Qiu; Matthew He (J. Networks, 2010)

Foreword. - Matthew He; Zhengbing Hu (J. Supercomput., 2011)

Algebraic Biology, Matrix Genetics, and Genetic Intelligence - Sergey V. Petoukhov; Matthew He (WorldScientific, 2023)