PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. - Deyun Pan; Ning Sun; Kei-Hoi Cheung; Zhong Guan; Ligeng Ma; Matthew Holford; Xingwang Deng; Hongyu Zhao 003 (BMC Bioinform., 2003)

VitaPad: visualization tools for the analysis of pathway data. - Matthew Holford; Naixin Li; Prakash M. Nadkarni; Hongyu Zhao 003 (Bioinform., 2005)

Pathway analysis using random forests classification and regression. - Herbert Pang; Aiping Lin; Matthew Holford; Bradley E. Enerson; Bin Lu; Michael P. Lawton; Eugenia Floyd; Hongyu Zhao 003 (Bioinform., 2006)

Approaches to neuroscience data integration. - Kei-Hoi Cheung; Ernest Lim; Matthias Samwald; Huajun Chen; Luis N. Marenco; Matthew Holford; Thomas M. Morse; Pradeep Mutalik; Gordon M. Shepherd; Perry L. Miller (Briefings Bioinform., 2009)

Analysis of Cancer Omics Data In A Semantic Web Framework. - Matthew Holford; Jamie P. McCusker; Kei-Hoi Cheung; Michael Krauthammer (SWAT4LS, 2010)

Using semantic web rules to reason on an ontology of pseudogenes. - Matthew Holford; Ekta Khurana; Kei-Hoi Cheung; Mark Gerstein (Bioinform., 2010)

A semantic web framework to integrate cancer omics data with biological knowledge. - Matthew Holford; Jamie P. McCusker; Kei-Hoi Cheung; Michael Krauthammer (BMC Bioinform., 2012)

Mutadelic: mutation analysis using description logic inferencing capabilities. - Matthew E. Holford; Michael Krauthammer (Bioinform., 2015)