Scale-Space Boundary Evolution Initialized by Cores. - Matthew J. McAuliffe; David H. Eberly; Daniel S. Fritsch; Edward L. Chaney; Stephen M. Pizer (VBC, 1996)

Medical Image Processing, Analysis & Visualization in Clinical Research. - Matthew J. McAuliffe; Francois M. Lalonde; Delia McGarry; William Gandler; Karl Csaky; Benes L. Trus (CBMS, 2001)

Registration of Time-Series Contrast Enhanced Magnetic Resonance Images for Renography. - Peter J. Yim; Hani B. Marcos; Peter L. Choyke; Matthew J. McAuliffe; Delia McGarry; Ian Heaton (CBMS, 2001)

Helical CT of von Hippel-Lindau: semi-automated segmentation of renal lesions. - Ronald M. Summers; Cecily M. L. Agcaoili; Matthew J. McAuliffe; Sarang S. Dalal; Peter J. Yim; Peter L. Choyke; McClellan M. Walther; W. Marston Linehan (ICIP (2), 2001)

Performance evaluation of multiscale vessel enhancement filtering. - Paul F. Hemler; Evan S. McCreedy; Matthew J. McAuliffe (Image Processing, 2004)

Free software tools for atlas-based volumetric neuroimage analysis. - Pierre-Louis Bazin; Dzung L. Pham; William Gandler; Matthew J. McAuliffe (Image Processing, 2005)

Assessment of radio frequency of hepatic tumors. - Paul F. Hemler; Evan S. McCreedy; Ruida Cheng; Bradford J. Wood; Matthew J. McAuliffe (Image-Guided Procedures, 2006)

Vasculature segmentation for radio frequency ablation of non-resectable hepatic tumors. - Paul F. Hemler; Evan S. McCreedy; Ruida Cheng; Bradford J. Wood; Matthew J. McAuliffe (Image Processing, 2006)

Radio Frequency Ablation Registration, Segmentation, and Fusion Tool. - Evan S. McCreedy; Ruida Cheng; Paul F. Hemler; Anand Viswanathan; Bradford J. Wood; Matthew J. McAuliffe (IEEE Trans. Inf. Technol. Biomed., 2006)

Segmentation of magnetic resonance images of the thighs for a new National Institutes of Health initiative. - A. Monzon; Paul F. Hemler; Mike A. Nalls; Todd M. Manini; Brian C. Clark; T. B. Harris; Matthew J. McAuliffe (Image Processing, 2007)

Java based volume rendering frameworks. - Ruida Cheng; Alexandra Bokinsky; Paul F. Hemler; Evan S. McCreedy; Matthew J. McAuliffe (Image-Guided Procedures, 2008)

Automated segmentation of computed tomography images. - Justin Senseney; Paul F. Hemler; Matthew J. McAuliffe (CBMS, 2009)

Ontology driven data integration for autism research. - Lynn Young; Samson W. Tu; Lakshika Tennakoon; David Vismer; Vadim Astakhov; Amarnath Gupta; Jeffrey S. Grethe; Maryann E. Martone; Amar K. Das; Matthew J. McAuliffe (CBMS, 2009)

Using global unique identifiers to link autism collections. - Stephen B. Johnson; Glen Whitney; Matthew J. McAuliffe; Hailong Wang; Evan S. McCreedy; Leon Rozenblit; Clark C. Evans (J. Am. Medical Informatics Assoc., 2010)

A flexible Java GPU-enhanced visualization framework and its applications. - Ruida Cheng; Justin Senseney; Nish Pandya; Evan S. McCreedy; Matthew J. McAuliffe; Alexandra Bokinsky (CBMS, 2012)

Sharing Heterogeneous Data: The National Database for Autism Research. - Dan Hall; Michael F. Huerta; Matthew J. McAuliffe; Gregory K. Farber (Neuroinformatics, 2012)

Segmentation and surface reconstruction model of prostate MRI to improve prostate cancer diagnosis. - Ruida Cheng; Marcelino Bernardo; Justin Senseney; Alexandra Bokinsky; William Gandler; Baris Turkbey; Thomas Pohida; Peter L. Choyke; Matthew J. McAuliffe (ISBI, 2013)

Java multi-histogram volume rendering framework for medical images. - Justin Senseney; Alexandra Bokinsky; Ruida Cheng; Evan S. McCreedy; Matthew J. McAuliffe (Image-Guided Procedures, 2013)

2D registration guided models for semi-automatic MRI prostate segmentation. - Ruida Cheng; Baris Turkbey; Justin Senseney; Marcelino Bernardo; Alexandra Bokinsky; William Gandler; Evan S. McCreedy; Thomas Pohida; Peter L. Choyke; Matthew J. McAuliffe (Image Processing, 2013)

GPU based multi-histogram volume navigation for virtual bronchoscopy. - Ruida Cheng; Sheng Xu 001; Alexandra Bokinsky; Evan S. McCreedy; William Gandler; Bradford J. Wood; Matthew J. McAuliffe (EMBC, 2014)

Atlas based AAM and SVM model for fully automatic MRI prostate segmentation. - Ruida Cheng; Baris Turkbey; William Gandler; Harsh K. Agarwal; Vijay P. Shah; Alexandra Bokinsky; Evan S. McCreedy; Shijun Wang; Sandeep Sankineni; Marcelino Bernardo; Thomas Pohida; Peter L. Choyke; et al. (EMBC, 2014)

Patellar segmentation from 3D magnetic resonance images using guided recursive ray-tracing for edge pattern detection. - Ruida Cheng; Jennifer N. Jackson; Evan S. McCreedy; William Gandler; J. J. F. A. Eijkenboom; M. van Middelkoop; Matthew J. McAuliffe; Frances T. Sheehan (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Gaze2Segment: A Pilot Study for Integrating Eye-Tracking Technology into Medical Image Segmentation. - Naji Khosravan; Haydar Celik; Baris Turkbey; Ruida Cheng; Evan S. McCreedy; Matthew J. McAuliffe; Sandra Bednarova; Elizabeth C. Jones; Xinjian Chen 001; Peter L. Choyke; Bradford J. Wood; Ulas Bagci (MCV/BAMBI@MICCAI, 2016)

Active appearance model and deep learning for more accurate prostate segmentation on MRI. - Ruida Cheng; Holger R. Roth; Le Lu 001; Shijun Wang; Baris Turkbey; William Gandler; Evan S. McCreedy; Harsh K. Agarwal; Peter L. Choyke; Ronald M. Summers; Matthew J. McAuliffe (Image Processing, 2016)

Deep learning with orthogonal volumetric HED segmentation and 3D surface reconstruction model of prostate MRI. - Ruida Cheng; Nathan Lay; Francesca Mertan; Baris Turkbey; Holger R. Roth; Le Lu 001; William Gandler; Evan S. McCreedy; Thomas Pohida; Peter L. Choyke; Matthew J. McAuliffe; Ronald M. Summers (ISBI, 2017)

Automatic MR prostate segmentation by deep learning with holistically-nested networks. - Ruida Cheng; Holger R. Roth; Nathan Lay; Le Lu 001; Baris Turkbey; William Gandler; Evan S. McCreedy; Peter L. Choyke; Ronald M. Summers; Matthew J. McAuliffe (Image Processing, 2017)

Long-term preservation of biomedical research data. - Vivek Navale; Matthew J. McAuliffe (F1000Research, 2018)

Development of an informatics system for accelerating biomedical research. - Vivek Navale; Michele Ji; Olga Vovk; Leonie Misquitta; Tsega Gebremichael; Alison Garcia; Yang Fann; Matthew J. McAuliffe (F1000Research, 2019)

The Integration of a Canonical Workflow Framework with an Informatics System for Disease Area Research. - Vivek Navale; Matthew J. McAuliffe (Data Intell., 2022)

Implementing Informatics Tools with Data Management Plans for Disease Area Research. - Vivek Navale; Matthew J. McAuliffe (Data Sci. J., 2023)