A Prototype Notebook-Based Environment for Computational Tools Computational Tools. - Jenifer L. Skidmore; Matthew J. Sottile; Janice E. Cuny; Allen D. Malony (SC, 1998)

INTERLACE: An Interoperation and Linking Architecture for Computational Engines. - Matthew J. Sottile; Allen D. Malony (Euro-Par, 1999)

Computational Experiments using Distributed Tools in a Web-Based Electronic Notebook Environment. - Allen D. Malony; Jenifer L. Skidmore; Matthew J. Sottile (HPCN Europe, 1999)

Computational experiments using distributed tools in a web-based electronic notebook environment. - Allen D. Malony; Janice E. Cuny; Jenifer L. Skidmore; Matthew J. Sottile (Future Gener. Comput. Syst., 2000)

Supermon: A High-Speed Cluster Monitoring System. - Matthew J. Sottile; Ronald G. Minnich (CLUSTER, 2002)

Life with Ed: A Case Study of a LinuxBIOS/BProc Cluster. - Sung-Eun Choi; Erik A. Hendriks; Ronald G. Minnich; Matthew J. Sottile; Aaron Marks (HPCS, 2002)

A Performance Interface for Component-Based Applications. - Sameer Shende; Allen D. Malony; Craig Edward Rasmussen; Matthew J. Sottile (IPDPS, 2003)

Analysis of microbenchmarks for performance tuning of clusters. - Matthew J. Sottile; Ronald G. Minnich (CLUSTER, 2004)

Co-array Python: A Parallel Extension to the Python Language. - Craig Edward Rasmussen; Matthew J. Sottile; Jarek Nieplocha; Robert W. Numrich; Eric Jones (Euro-Par, 2004)

Performance technology for parallel and distributed component software. - Allen D. Malony; Sameer Shende; Nick Trebon; Jaideep Ray; Robert C. Armstrong; Craig Edward Rasmussen; Matthew J. Sottile (Concurr. Pract. Exp., 2005)

High-Performance Component Software Systems. - Randall Bramley; Robert C. Armstrong; Lois C. McInnes; Matthew J. Sottile (Parallel Processing for Scientific Computing, 2006)

Co-Array Collectives: Refined Semantics for Co-Array Fortran. - Matthew J. Sottile; Craig Edward Rasmussen; Richard L. Graham (International Conference on Computational Science (2), 2006)

Performance analysis of parallel programs via message-passing graph traversal. - Matthew J. Sottile; Vaddadi P. Chandu; David A. Bader (IPDPS, 2006)

The CCA component model for high-performance scientific computing. - Robert C. Armstrong; Gary Kumfert; Lois C. McInnes; Steven G. Parker; Benjamin A. Allan; Matthew J. Sottile; Thomas Epperly; Tamara Dahlgren (Concurr. Comput. Pract. Exp., 2006)

Bridging the language gap in scientific computing: the Chasm approach. - Craig Edward Rasmussen; Matthew J. Sottile; Sameer Shende; Allen D. Malony (Concurr. Comput. Pract. Exp., 2006)

Right-weight kernels: an off-the-shelf alternative to custom light-weight kernels. - Ronald G. Minnich; Matthew J. Sottile; Sung-Eun Choi; Erik A. Hendriks; Jim McKie (ACM SIGOPS Oper. Syst. Rev., 2006)

Rapid prototyping frameworks for developing scientific applications: A case study. - Christopher D. Rickett; Sung-Eun Choi; Craig Edward Rasmussen; Matthew J. Sottile (J. Supercomput., 2006)

TAUoverSupermon : Low-Overhead Online Parallel Performance Monitoring. - Aroon Nataraj; Matthew J. Sottile; Alan Morris; Allen D. Malony; Sameer Shende (Euro-Par, 2007)

The ghost in the machine: observing the effects of kernel operation on parallel application performance. - Aroon Nataraj; Alan Morris; Allen D. Malony; Matthew J. Sottile; Peter H. Beckman (SC, 2007)

WOOL: A Workflow Programming Language. - Geoffrey C. Hulette; Matthew J. Sottile; Allen D. Malony (eScience, 2008)

An Open Domain-Extensible Environment for Simulation-Based Scientific Investigation (ODESSI). - Adnan Salman; Allen D. Malony; Matthew J. Sottile (ICCS (1), 2009)

Performance Tool Integration in a GPU Programming Environment: Experiences with TAU and HMPP. - Allen D. Malony; Shangkar Mayanglambam; Laurent Morin; Matthew J. Sottile; Stéphane Bihan; Sameer Shende; François Bodin (PARCO, 2009)

Performance Measurement of Applications with GPU Acceleration using CUDA. - Shangkar Mayanglambam; Allen D. Malony; Matthew J. Sottile (PARCO, 2009)

Workflow representation and runtime based on lazy functional streams. - Matthew J. Sottile; Geoffrey C. Hulette; Allen D. Malony (SC-WORKS, 2009)

Unsupervised Segmentation for Inflammation Detection in Histopathology Images. - Kristine A. Thomas; Matthew J. Sottile; Carolyn M. Salafia (ICISP, 2010)

Curve and surface reconstruction: algorithms with mathematical analysis by Tamal K. Dey Cambridge University Press. - Matthew J. Sottile (SIGACT News, 2010)

Cellular Automata. - Matthew J. Sottile (Encyclopedia of Parallel Computing, 2011)

A Type-Based Approach to Separating Protocol from Application Logic - A Case Study in Hybrid Computer Programming. - Geoffrey C. Hulette; Matthew J. Sottile; Allen D. Malony (Euro-Par, 2012)

Composing typemaps in Twig. - Geoffrey C. Hulette; Matthew J. Sottile; Allen D. Malony (GPCE, 2012)

Identifying Change Patterns in Software History. - Jason Dagit; Matthew J. Sottile (DChanges, 2013)

Semi-automatic extraction of software skeletons for benchmarking large-scale parallel applications. - Matthew J. Sottile; Amruth Rudraiah Dakshinamurthy; Gilbert Hendry; Damian Dechev (SIGSIM-PADS, 2013)

Deriving program transformations by demonstration - Matthew J. Sottile; Geoffrey C. Hulette (CoRR, 2013)

ForOpenCL: transformations exploiting array syntax in Fortran for accelerator programming. - Matthew J. Sottile; Craig Edward Rasmussen; Wayne N. Weseloh; Robert W. Robey; Daniel J. Quinlan; Jeffrey Overbey (Int. J. Comput. Sci. Eng., 2013)

Locally-Oriented Programming: A Simple Programming Model for Stencil-Based Computations on Multi-Level Distributed Memory Architectures. - Craig Edward Rasmussen; Matthew J. Sottile; Daniel Nagle; Søren Rasmussen (CoRR, 2015)

Blob indentation identification via curvature measurement. - Matthew J. Sottile (CoRR, 2015)

Static Analysis Techniques for Semiautomatic Synthesis of Message Passing Software Skeletons. - Matthew J. Sottile; Jason Dagit; Deli Zhang; Gilbert Hendry; Damian Dechev (ACM Trans. Model. Comput. Simul., 2015)

CAFe: Coarray Fortran Extensions for Heterogeneous Computing. - Craig Edward Rasmussen; Matthew J. Sottile; Søren Rasmussen; Daniel Nagle; William Dumas (IPDPS Workshops, 2016)

Array Types for a Graph Processing Language. - Mark Tullsen; Matthew J. Sottile (IPDPS Workshops, 2016)

Loss of community identity in opinion dynamics models as a function of inter-group interaction strength. - Hossein Noorazar; Matthew J. Sottile; Kevin Vixie (CoRR, 2017)

PastoralScape: An Environment-Driven Model of Vaccination Decision Making Within Pastoralist Groups in East Africa. - Matthew J. Sottile; Richard Iles; Craig McConnel; Ofer Amram; Eric Lofgren (J. Artif. Soc. Soc. Simul., 2021)

Algebraic Algorithms for Betweenness and Percolation Centrality. - Altansuren Tumurbaatar; Matthew J. Sottile (J. Graph Algorithms Appl., 2021)

Design and Implementation of a Verified Interpreter for Additive Manufacturing Programs (Experience Report). - Matthew J. Sottile; Mohit Tekriwal (FUNARCH, 2024)

Mechanized Semantics for Correctness of the RS274 Additive Manufacturing Command Language. - Mohit Tekriwal; Matthew J. Sottile (NFM, 2025)