Multi-Species Anatomy Ontology Development Requires a Pluralist Approach to Label-Class Mapping. - István Mikó; Matthew J. Yoder; Matthew A. Bertone; Katja C. Seltmann; Andrew R. Deans (ICBO, 2011)

Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment. - Matthew A. Bertone; István Mikó; Matthew J. Yoder; Katja C. Seltmann; James P. Balhoff; Andrew R. Deans (Database J. Biol. Databases Curation, 2013)

Co-designing Scientific Software: Hackathons for Participatory Interface Design. - Andrea K. Thomer; Michael B. Twidale; Jinlong Guo; Matthew J. Yoder (CHI Extended Abstracts, 2016)

Transforming Taxonomic Interfaces. - Andrea K. Thomer; Michael B. Twidale; Matthew J. Yoder (Proc. ACM Hum. Comput. Interact., 2018)

Taxonomy and the Production of Semantic Phenotypes. - Matthew J. Yoder; Michael B. Twidale; Andrea K. Thomer; Lars Vogt; Nico M. Franz; Jinlong Guo; Andrew R. Deans; James P. Balhoff (Application of Semantic Technology in Biodiversity Science, 2018)

Transforming the study of organisms: Phenomic data models and knowledge bases. - Anne E. Thessen; Ramona L. Walls; Lars Vogt; Jessica Singer; Robert Warren; Pier Luigi Buttigieg; James P. Balhoff; Christopher J. Mungall; Deborah L. McGuinness; Brian J. Stucky; Matthew J. Yoder; Melissa A. Haendel (PLoS Comput. Biol., 2020)