MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences. - Nawar Malhis; Matthew Jacobson; Jörg Gsponer (Nucleic Acids Res., 2016)

Penalized-Likelihood Reconstruction With High-Fidelity Measurement Models for High-Resolution Cone-Beam Imaging. - Steven Tilley; Matthew Jacobson; Qian Cao; Michael Brehler; Alejandro Sisniega; Wojciech Zbijewski; J. Webster Stayman (IEEE Trans. Medical Imaging, 2018)

LIST-S2: taxonomy based sorting of deleterious missense mutations across species. - Nawar Malhis; Matthew Jacobson; Steven J. M. Jones; Jörg Gsponer (Nucleic Acids Res., 2020)

Curation of over 10 000 transcriptomic studies to enable data reuse. - Nathaniel Lim; Stepan Tesar; Manuel Belmadani; Guillaume Poirier-Morency; Burak Ogan Mancarci; Jordan Sicherman; Matthew Jacobson; Justin Leong; Patrick Tan; Paul Pavlidis (Database J. Biol. Databases Curation, 2021)

GraPES: The Granule Protein Enrichment Server for prediction of biological condensate constituents. - Erich R. Kuechler; Matthew Jacobson; Thibault Mayor; Jörg Gsponer (Nucleic Acids Res., 2022)