Evolutionary modelling of feed forward loops in gene regulatory networks. - Max B. Cooper; Matthew Loose; John F. Y. Brookfield (Biosyst., 2008)

The evolutionary influence of binding site organisation on gene regulatory networks. - Max B. Cooper; Matthew Loose; John F. Y. Brookfield (Biosyst., 2009)

Gene Regulatory Networks in the Genomics Era. - Matthew Loose; Roger Patient; Xiangdong Fang; Hongxing Lei (Genom. Proteom. Bioinform., 2013)

AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts. - Teri Evans; Matthew Loose (BMC Bioinform., 2015)

MinION Analysis and Reference Consortium: Phase 1 data release and analysis. - Camilla L. C. Ip; Matthew Loose; John R. Tyson; Mariateresa de Cesare; Bonnie L. Brown; Miten Jain; Richard M. Leggett; David A. Eccles; Vadim Zalunin; John M. Urban; Paolo Piazza; Rory J. Bowden; et al. (F1000Research, 2015)

Establishment and cryptic transmission of Zika virus in Brazil and the Americas. - Nuno R. Faria; Joshua Quick; I. M. Claro; Julien Thézé; J. G. de Jesus; Marta Giovanetti; Moritz U. G. Kraemer; S. C. Hill; Allison Black; A. C. Da Costa; L. C. Franco; S. P. Silva; et al. (Nat., 2017)

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files. - Alexander Payne; Nadine Holmes; Vardhman K. Rakyan; Matthew Loose (Bioinform., 2019)

minoTour, real-time monitoring and analysis for nanopore sequencers. - Rory Munro; Roberto Santos 001; Alexander Payne; Teri Forey; Solomon Osei; Nadine Holmes; Matthew Loose (Bioinform., 2022)