PPD v1.0 - an integrated, web-accessible database of experimentally determined protein pKa values. - Christopher P. Toseland; Helen M. McSparron; Matthew N. Davies; Darren R. Flower (Nucleic Acids Res., 2006)

The Immune System in Pieces: Computational Lessons from Degeneracy in the Immune System. - Miguel Mendao; Jonathan Timmis; Paul S. Andrews; Matthew N. Davies (FOCI, 2007)

On the hierarchical classification of G protein-coupled receptors. - Matthew N. Davies; Andrew Secker; Alex Alves Freitas; Miguel Mendao; Jonathan Timmis; Darren R. Flower (Bioinform., 2007)

An Artificial Immune System for Evolving Amino Acid Clusters Tailored to Protein Function Prediction. - Andrew Secker; Matthew N. Davies; Alex Alves Freitas; Jonathan Timmis; Edward Clark; Darren R. Flower (ICARIS, 2008)

Optimizing amino acid groupings for GPCR classification. - Matthew N. Davies; Andrew Secker; Alex Alves Freitas; Edward Clark; Jonathan Timmis; Darren R. Flower (Bioinform., 2008)

An Artificial Immune System for Clustering Amino Acids in the Context of Protein Function Classification. - Andrew Secker; Matthew N. Davies; Alex Alves Freitas; Jonathan Timmis; Edward Clark; Darren R. Flower (J. Math. Model. Algorithms, 2009)

Hierarchical classification of G-Protein-Coupled Receptors with data-driven selection of attributes and classifiers. - Andrew Secker; Matthew N. Davies; Alex Alves Freitas; Edward Clark; Jonathan Timmis; Darren R. Flower (Int. J. Data Min. Bioinform., 2010)