Improved semiempirical heats of formation through the use of bond and group equivalents. - Matthew P. Repasky; Jayaraman Chandrasekhar; William L. Jorgensen (J. Comput. Chem., 2002)

PDDG/PM3 and PDDG/MNDO: Improved semiempirical methods. - Matthew P. Repasky; Jayaraman Chandrasekhar; William L. Jorgensen (J. Comput. Chem., 2002)

Testing electronic structure methods for describing intermolecular H · · · H interactions in supramolecular chemistry. - Ricard Casadesús; Miquel Moreno; Àngels González-Lafont; José M. Lluch; Matthew P. Repasky (J. Comput. Chem., 2004)

Extension of the PDDG/PM3 and PDDG/MNDO semiempirical molecular orbital methods to the halogens. - Ivan Tubert-Brohman; Cristiano Ruch Werneck Guimarães; Matthew P. Repasky; William L. Jorgensen (J. Comput. Chem., 2004)

Integrated Modeling Program, Applied Chemical Theory (IMPACT). - Jay L. Banks; Hege S. Beard; Yixiang X. Cao; Art E. Cho; Wolfgang Damm; Ramy Farid; Anthony K. Felts; Thomas A. Halgren; Daniel T. Mainz; Jon R. Maple; Robert B. Murphy; Dean M. Philipp; et al. (J. Comput. Chem., 2005)

Improving database enrichment through ensemble docking. - Shashidhar N. Rao; Paul C. Sanschagrin; Jeremy R. Greenwood; Matthew P. Repasky; Woody Sherman; Ramy Farid (J. Comput. Aided Mol. Des., 2008)

Docking performance of the glide program as evaluated on the Astex and DUD datasets: a complete set of glide SP results and selected results for a new scoring function integrating WaterMap and glide. - Matthew P. Repasky; Robert B. Murphy; Jay L. Banks; Jeremy R. Greenwood; Ivan Tubert-Brohman; Sathesh Bhat; Richard A. Friesner (J. Comput. Aided Mol. Des., 2012)

Improved Docking of Polypeptides with Glide. - Ivan Tubert-Brohman; Woody Sherman; Matthew P. Repasky; Thijs Beuming (J. Chem. Inf. Model., 2013)

Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery. - Yuqi Zhang 003; Márton Vass; Da Shi; Esam Abualrous; Jennifer M. Chambers; Nikita Chopra; Christopher Higgs; Koushik Kasavajhala; Hubert Li; Prajwal Nandekar; Hideyuki Sato; Edward B. Miller; et al. (J. Chem. Inf. Model., 2023)