Stochastic Delay Accelerates Signaling in Gene Networks. - Kresimir Josic; José Manuel López; William Ott; LieJune Shiau; Matthew R. Bennett (PLoS Comput. Biol., 2011)

Mapping the Environmental Fitness Landscape of a Synthetic Gene Circuit. - Dmitry Nevozhay; Rhys M. Adams; Elizabeth Van Itallie; Matthew R. Bennett; Gábor Balázsi (PLoS Comput. Biol., 2012)

The relationship between stochastic and deterministic quasi-steady state approximations. - Jae Kyoung Kim; Kresimir Josic; Matthew R. Bennett (BMC Syst. Biol., 2015)

Timing and Variability of Galactose Metabolic Gene Activation Depend on the Rate of Environmental Change. - Truong D. Nguyen-Huu; Chinmaya Gupta; Bo Ma; William Ott; Kresimir Josic; Matthew R. Bennett (PLoS Comput. Biol., 2015)

Sources of Variability in a Synthetic Gene Oscillator. - Alan Veliz-Cuba; Andrew J. Hirning; Adam A. Atanas; Faiza Hussain; Flavia Vancia; Kresimir Josic; Matthew R. Bennett (PLoS Comput. Biol., 2015)

The Effects of Time-Varying Temperature on Delays in Genetic Networks. - Marcella M. Gomez; Richard M. Murray; Matthew R. Bennett (SIAM J. Appl. Dyn. Syst., 2016)

Stability of Systems with Stochastic Delays and Applications to Genetic Regulatory Networks. - Marcella M. Gomez; Mehdi Sadeghpour; Matthew R. Bennett; Gábor Orosz; Richard M. Murray (SIAM J. Appl. Dyn. Syst., 2016)

Bistability and oscillations in co-repressive synthetic microbial consortia. - Mehdi Sadeghpour; Alan Veliz-Cuba; Gábor Orosz; Kresimir Josic; Matthew R. Bennett (Quant. Biol., 2017)

Bayesian inference of distributed time delay in transcriptional and translational regulation. - Boseung Choi; Yu-Yu Cheng; Selahattin Cinar; William Ott; Matthew R. Bennett; Kresimir Josic; Jae Kyoung Kim (Bioinform., 2020)

Stochastic Neural Networks for Automatic Cell Tracking in Microscopy Image Sequences of Bacterial Colonies. - Sorena Sarmadi; James J. Winkle; Razan N. Alnahhas; Matthew R. Bennett; Kresimir Josic; Andreas Mang; Robert Azencott (CoRR, 2021)

Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia. - James J. Winkle; Bhargav R. Karamched; Matthew R. Bennett; William Ott; Kresimir Josic (PLoS Comput. Biol., 2021)